BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0712.p
         (166 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981610|ref|YP_001352166.1| hypothetical protein mma_0476 [...   278   9e-77

>gi|152981610|ref|YP_001352166.1| hypothetical protein mma_0476
           [Janthinobacterium sp. Marseille]
          Length = 168

 Score =  278 bits (712), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 146/160 (91%)

Query: 3   AKKEHISETPATQFLRKQGVAFSEYPYAYEEHGGTAVSARELGVDEHVVIKTLVMQDEAS 62
           AKKEHISETPATQ+LR+QG+ FSE+PY YEEHGGT VSA++LGVDEH V+KTLVMQDEA+
Sbjct: 7   AKKEHISETPATQWLRRQGIGFSEHPYDYEEHGGTTVSAQKLGVDEHHVVKTLVMQDEAA 66

Query: 63  KPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGYLIGGTSPFGTRKTMPVYVE 122
           KPL+VLMHGD KVSTKNLARQIGCKSVEPCKP+VANRHSGYLIGGTSPFGTRK MPVYVE
Sbjct: 67  KPLIVLMHGDRKVSTKNLARQIGCKSVEPCKPDVANRHSGYLIGGTSPFGTRKQMPVYVE 126

Query: 123 ASILELDKIYINGGRRGFLVGIDPAVILKVLPAKPVQCAL 162
            SIL L+ IYINGGRRG+L+GI P V++  L A+PVQCAL
Sbjct: 127 QSILALEHIYINGGRRGYLIGIAPQVLIDKLAAQPVQCAL 166


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 388,430
Number of extensions: 14596
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 89
Effective length of database: 936,352
Effective search space: 83335328
Effective search space used: 83335328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)