BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0711.p
         (307 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthino...   480   e-137
gi|152981264|ref|YP_001354893.1| site specific integrase/recombi...   133   1e-32

>gi|152981084|ref|YP_001352164.1| integrase/recombinase
           [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  480 bits (1236), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/294 (77%), Positives = 255/294 (86%)

Query: 14  SREAIDEFCDSLWLEDGLSSNTLEAYRRDMTLYAHWLHQERAKPLYETQAEDLYAYFAAR 73
           S+  IDEFCD+LWLEDGL+ N+LEAYRRD+ L+A WL QER K L     EDL  YF A+
Sbjct: 8   SQSEIDEFCDTLWLEDGLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGYFFAK 67

Query: 74  HDETKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLA 133
           H  TK +SSNRRLAVL+RF+QLALRQN++  DPCL++R+A+QP R+PKTLSE QVEALLA
Sbjct: 68  HATTKATSSNRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEALLA 127

Query: 134 APDVSTPLGLRDRAMIELMYASGLRVSELVLLKTIEVGMNEGVLRVTGKGSKTRLVPFGE 193
           APDV+TPLGLRDR M+ELMYASGLRV+ELVLLK++EVGMNEGVLRVTGKG KTRL+PFGE
Sbjct: 128 APDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIPFGE 187

Query: 194 EAGSWIARYLAEARGQILQGQIDDALFVTARGAAMTRQMFWTLIKKYALQAGITVRLSPH 253
           EA +WI RYL EARG IL GQ+DDALFVTARG AMTRQMFWTLIKK+A  A I   LSPH
Sbjct: 188 EARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPLSPH 247

Query: 254 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307
           TLRHAFATHLLNHGADLRVVQLLLGH+DISTTQIYTHVARERLK+LH  HHPRG
Sbjct: 248 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHPRG 301


>gi|152981264|ref|YP_001354893.1| site specific
           integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score =  133 bits (334), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 160/310 (51%), Gaps = 25/310 (8%)

Query: 18  IDEFCDSLWLEDGLSSNTLEAYRRDM-TLYAHWLHQERAKPLYETQAEDLYAYFAARHDE 76
           +D + D+L  +  L+  T  +YRRD+  L A     +    L       +  + A  H +
Sbjct: 10  LDGYLDNLISQRQLAPLTTVSYRRDLLELLAFATASDSKATLTGVTHFQIRKFAAQLHAQ 69

Query: 77  -TKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLA-- 133
                S  R+L+  R FF     QN + ++P   ++  ++ + LPK L+      L+A  
Sbjct: 70  GLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVRLVAEH 129

Query: 134 APDVS--TPLGLRDRAMIELMYASGLRVSELVLLKT-------------IEVGMNEGVLR 178
           AP  S  + + L + AM EL+Y+SGLRVSELV L               I+   +E  + 
Sbjct: 130 APGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAHE--VM 187

Query: 179 VTGKGSKTRLVPFGEEAGSWIARYLAEARGQILQGQID-DALFVTARGAAMTRQMFWTLI 237
           VTGKG+K R VP G+ A   +  +LA  R  +++  +D   LF++ RG  ++ ++    +
Sbjct: 188 VTGKGNKMRTVPIGQAAMDALKAWLA-VRDTLVK--LDPHPLFLSERGTRVSARVVQLRL 244

Query: 238 KKYALQAGITVRLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK 297
           K +    G+   + PH LRH+FA+H+L    DLR VQ +LGHA I+ TQIYT +  +RL 
Sbjct: 245 KAHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQRLA 304

Query: 298 QLHAAHHPRG 307
           Q++ A HPR 
Sbjct: 305 QVYDAAHPRA 314


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 699,319
Number of extensions: 27133
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 224
Effective length of database: 914,170
Effective search space: 204774080
Effective search space used: 204774080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)