BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0708.p (426 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980992|ref|YP_001352826.1| TRAP-type mannitol/chloroaromat... 90 3e-19 gi|152981202|ref|YP_001351815.1| TRAP-type mannitol/chloroaromat... 86 5e-18 >gi|152980992|ref|YP_001352826.1| TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Janthinobacterium sp. Marseille] Length = 563 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 6/185 (3%) Query: 3 ALIIFVLLFGLMLTGMPISISLGLTVLTF------LFTMTDVPIQSVALKLFTGIEKFEI 56 A I+F L +L+G P++ SL L F L + +Q++ ++F + + Sbjct: 10 APIMFGALVVFLLSGFPVAFSLAANGLFFGLMGIELGLLKPELLQALPNRIFGIMANDTL 69 Query: 57 MAIPFFILAGNFLTHGGVARRMINFATSMVGHWYGGLALAGVLACALFAAVSGSSPATVV 116 +AIPFF G L G+A +++ + G GG+A A + AL AA +G A+V+ Sbjct: 70 LAIPFFTFMGLILERSGMAEDLLDTIGQLFGPLRGGVAYAVIFVGALLAATTGVVAASVI 129 Query: 117 AIGSIILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVV 176 ++G I LP M++ G+ + +GVI SG L +IPPS+V+++ + SVG ++ A Sbjct: 130 SMGLISLPVMLRYGYDKKIASGVIAASGTLAQIIPPSLVLIVMADQLGRSVGDMYQAAFG 189 Query: 177 PGLLL 181 PGL+L Sbjct: 190 PGLML 194 Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 103/199 (51%), Gaps = 3/199 (1%) Query: 220 LFLIVIVMGGIYTGVFTPTEAAAMAAVYAFFISVFVYKDLRLSQVPKVLLDSASMSAMLL 279 L LI +V+G I+ G+ TPTE M A A +++ + + L + + + ++ +S ++ Sbjct: 307 LALIFLVLGTIFVGIATPTEGGGMGAFGALVLAI-MNRRLSWDLLKQAMNSTSRLSCFVM 365 Query: 280 YIITNAVLFSFLVTSENIPQAMAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLIL 339 +I+ + +F + N + +T G FL+VVNIL ++ + IL Sbjct: 366 FILIGSSVFGLIFRGVNGDLWVEHLLTSLPGGTAGFLIVVNILFFGLAFFLDFFELAFIL 425 Query: 340 APILFPVAMKLGIDPVHFGILIVVNMEVGMCHPPVGLNLYVASGI--TKMGITELTIAVM 397 P++ PVA K+GID + FG+L+ VNM+ HPP G L+ + ++ +++ + Sbjct: 426 VPLVGPVAEKMGIDLIWFGVLLSVNMQTSFMHPPFGFALFYLRSVAPKEVKTSDIYWGSV 485 Query: 398 PWLLTMLGFLMLVTYWPTL 416 P++L + + L+ +P L Sbjct: 486 PFVLIQVIMVTLIIAFPKL 504 >gi|152981202|ref|YP_001351815.1| TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Janthinobacterium sp. Marseille] Length = 624 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 109/207 (52%), Gaps = 3/207 (1%) Query: 222 LIVIVMGGIYTGVFTPTEAAAMAAVYAFFISVFVYKDLRLSQVPKVLLDSASMSAMLLYI 281 L +V+ I G+ T TE+AA+ A AF +++ + L ++ + + ++ +AM+ ++ Sbjct: 418 LTFLVLAVILFGITTATESAAVGAFGAFLLAIQA-RTLTWKKIKEAVFLTSKTTAMVCWL 476 Query: 282 ITNAVLFSFLVTSENIPQAMAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAP 341 + +FS + + W+ L P+ F+L+ ++ + G +E + I++I P Sbjct: 477 FVGSAIFSAVFAILGGQALVEQWVLSLDLTPLQFMLLSQAIIFVLGWPLEWTEIIVIFVP 536 Query: 342 ILFPVAMKLGIDPVHFGILIVVNMEVGMCHPPVGLNLYVASGITKMGIT--ELTIAVMPW 399 I P+ I+P+ +G L+ VN++ PPV ++ Y G+ +T ++ +MP+ Sbjct: 537 IFLPMLHHFDINPLLWGTLVFVNLQAAFLSPPVAMSAYYLKGVAPKHVTLNQIFAGMMPY 596 Query: 400 LLTMLGFLMLVTYWPTLSLWLPNLIYN 426 + ++ ++L+ WP ++LWLP +Y Sbjct: 597 MFIVIVCMVLMYLWPGMTLWLPEFLYG 623 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 2/151 (1%) Query: 56 IMAIPFFILAGNFLTHGGVARRMINFATSMVGHWYGGLALAGVLACALFAAVSGSSPATV 115 +++IP F+L G + G + +M LA+A ++ C + SG A V Sbjct: 69 LVSIPLFVLMGYVMERGALVDKMFYSFQLAFRRVPASLAVASLIVCTFWGIASGLVGAVV 128 Query: 116 VAIGSIILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGV 175 V +G I M+K G+ R AGVIT G LGILIPPS+++++++ S+ KL+ A + Sbjct: 129 VLMGVIAFNPMLKAGYDTRLAAGVITAGGTLGILIPPSVMIIVFAAVAGESIVKLYAAAM 188 Query: 176 VPGLLLAF--LLGLTTWYLARKNNYPRLRKA 204 +PG LAF L+ + W + PRL ++ Sbjct: 189 LPGFFLAFLYLVYIIGWAMINPKIAPRLPES 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 829,575 Number of extensions: 30157 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 4 Length of query: 426 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 340 Effective length of database: 903,079 Effective search space: 307046860 Effective search space used: 307046860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)