BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0705.p (675 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982047|ref|YP_001352158.1| signal transduction histidine k... 805 0.0 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 144 1e-35 gi|152982390|ref|YP_001355364.1| signal transduction histidine k... 95 1e-20 gi|152981064|ref|YP_001351846.1| two component sensor histidine ... 79 9e-16 gi|152982364|ref|YP_001355202.1| two-component sensor histidine ... 75 1e-14 >gi|152982047|ref|YP_001352158.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/651 (63%), Positives = 497/651 (76%), Gaps = 10/651 (1%) Query: 24 RKTTMRWLIPFLLVCLFLVTLIWLPRQAQQMEASERLEQLIADSLWVEQAIRFQLSRDDE 83 RK RWL P L LFL TLIWLP +Q EA+ER EQLIADSLWVEQ IRFQL R++E Sbjct: 16 RKQAWRWLAPLFLALLFLTTLIWLPLHEKQQEAAERQEQLIADSLWVEQTIRFQLQRNEE 75 Query: 84 SMRIIGREISNGRLHQDHFRSRLNALLRNNREFYRVTWFNADGQAIASTDDLPISRHDLS 143 S+ ++G EI +G L R+ L+RNN E +R+ +ADG+ + STD+ I+ ++LS Sbjct: 76 SLGLMGSEIVSGYLVGKRLLDRMEGLIRNNHEIHRIIQLDADGKLLTSTDETLITFNELS 135 Query: 144 QSSLMTAERARKMRRPLYSPPAVPPGIAEPMLMDYHVPLFHDNHYIGSLVASYAVARILN 203 S ERAR R PLYS PA I+ P+++DYHVPLF N YIGS++ASY + IL+ Sbjct: 136 APSKRANERARTTRTPLYSQPAT--DISGPVMIDYHVPLFVGNKYIGSIIASYLASSILD 193 Query: 204 EMVPWWFAQDNEISLTDTDDNVVARRTSGGPGLNVYTHRRELELPGLTLVLHTNSTKSAP 263 +MVPWWFAQDNEI+LTD +D ++ +R SGG G VYTHRR L L GL+L L TNS KSAP Sbjct: 194 DMVPWWFAQDNEIALTDINDVIIHKRASGGAGRGVYTHRRALNLAGLSLKLSTNSIKSAP 253 Query: 264 KLLPNLLVGSVIVLSLGLLWSLWALWRDINRRTKAEKALLNEAVFRAAMENSLVTGMRAR 323 KLLP+LLV +VI+LSLGL WSL ALWRDINRR AE AL + FR AMENSL+TG+RAR Sbjct: 254 KLLPSLLVDTVILLSLGLAWSLIALWRDINRRLAAETALREQIAFRTAMENSLITGLRAR 313 Query: 324 DLEGRITYVNPAFCKMVGFQAEELVGKVPPMPYWAPEAMDEYQERFSNVLAGRVTPQ-FE 382 DLEGR+TYVNPAF +MVG AEE+VG +PPMPYWAPEA EY FS V AG PQ FE Sbjct: 314 DLEGRVTYVNPAFSQMVGMPAEEIVGHLPPMPYWAPEARTEYHRHFSQVAAGTANPQGFE 373 Query: 383 TIFQRRDGERFPVLIFESPLVDQDGKQTGWMGSILDISERKRAEDLNRTQEEKLQASARL 442 T+FQ DG R PVLIFESPLVD G QTGWMGSILDIS+RKR EDLNR QEEKLQASARL Sbjct: 374 TVFQHSDGRRIPVLIFESPLVDNTGAQTGWMGSILDISDRKRVEDLNRQQEEKLQASARL 433 Query: 443 ASMGEIASTLAHELNQPLAAISSYTTGALNMMQQGQAEP-----RALQPALEKIHAQAQR 497 A+MGEIASTLAHELNQPLAAISSYTTGALNM+++ +++ L ALEK AQAQR Sbjct: 434 ATMGEIASTLAHELNQPLAAISSYTTGALNMLERDKSKAAEVNIDMLTHALEKAQAQAQR 493 Query: 498 AGHVIRSVHQFVKKREPARQRLQIRQLVDNVAPLIELQAQQFFVVLQWQVPKSLPAVLGD 557 AG +IRSVH FVKKREP R + I +L+DNVAPL+ELQAQ++FV ++ +P +LPAVL D Sbjct: 494 AGQIIRSVHTFVKKREPMRTAVTIEELIDNVAPLVELQAQKYFVFIKIDIPDNLPAVLAD 553 Query: 558 QVLLEQVLLNLTRNGIQAMAAVPSARRILRVSAELTRNDDGAESVTVSVIDQGHGITEDV 617 VLLEQVLLNLTRN I++M ++ +R+LR++A + +D +V VS+ DQGHGI +V Sbjct: 554 HVLLEQVLLNLTRNAIESMQSIAPEKRVLRIAAAIDESD--PPNVVVSISDQGHGIPPEV 611 Query: 618 AARLFSPFFSTKAEGMGMGLNICRTTIEFHGGTLTYTDNPAGGTIFRFSLP 668 A RL+SPFFSTKA+GMGMGL+ICRT IEFHGGTLT+ DNP GGTIFRFSLP Sbjct: 612 AERLYSPFFSTKADGMGMGLSICRTAIEFHGGTLTHADNPGGGTIFRFSLP 662 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 132/248 (53%), Gaps = 4/248 (1%) Query: 421 ERKRAEDLNRTQEEKLQASARLASMGEIASTLAHELNQPLAAISSYTTGALNMMQQGQAE 480 +R RA++ Q L ARL S+GE+ +++ HE+NQPL AI + A M+ Q Sbjct: 336 KRLRADEEANRQRTALAHVARLGSVGELTASIVHEINQPLGAILANADAATMMLNQQSHP 395 Query: 481 PRALQPALEKIHAQAQRAGHVIRSVHQFVKKREPARQRLQIRQLVDNVAPLIELQAQQFF 540 L+ L I RA +I+ + + KR + + + +++D L+ A + Sbjct: 396 DHELRAILADIRDDNLRASLIIQKLRVLLSKRSLESKPVSLNEVIDTSRSLLGNLAIKHH 455 Query: 541 VVLQWQVPKSLPAVLGDQVLLEQVLLNLTRNGIQAMAAVPSARRILRVSAELTRNDDGAE 600 V++ ++ LP ++GD L+QVL+NL N ++AM AVP A+R L + E A Sbjct: 456 VMMAIELAPDLPMIMGDSTHLQQVLINLASNAMEAMEAVPPAQRTLSIKTEQC----NAS 511 Query: 601 SVTVSVIDQGHGITEDVAARLFSPFFSTKAEGMGMGLNICRTTIEFHGGTLTYTDNPAGG 660 + + V D+G GI ++ +F F++TK EGMGMGL I +T ++ H G + ++PAGG Sbjct: 512 HIRLIVADKGPGIPTNILPNIFESFYTTKPEGMGMGLAIVQTIVDAHCGLIETFNDPAGG 571 Query: 661 TIFRFSLP 668 F + P Sbjct: 572 AAFVITFP 579 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 20/275 (7%) Query: 405 QDGKQTGWMGSILDISERKRAEDLNRTQEEKLQA------SARLASMGEIASTLAHELNQ 458 Q+ + W G+ LD +R +L +T + +QA + +LA++GEI + +AHE+N Sbjct: 407 QNAELKSW-GNELDRKVVERTAELEQTNKLLVQAQQQLVLAEKLAAIGEITAGVAHEINN 465 Query: 459 PLAAISSYTTGALNMMQQG-QAEPRALQPALEKIHAQAQRAGHVIRSVHQFVKKREPAR- 516 P+A + G L++++ A + +Q L+ + Q R ++ + QF E A Sbjct: 466 PVAVLQ----GNLDVLRDTLGAAAKPVQGELQLMDQQIYRINTIVTKLLQFASPGEFAGY 521 Query: 517 -QRLQIRQLVDNVAPLIELQAQQFFVVLQWQVPKSLPAVLGDQVLLEQVLLNLTRNGIQA 575 + + I ++V + L+ Q + + + +LP + ++ L+QVL+NL N I A Sbjct: 522 VETVVIDEIVADSLVLVRHLLNQSRIAVVHKKEATLPVSI-NRGELQQVLINLFTNAIHA 580 Query: 576 MAAVPSARRILRVSAELTRNDDGAESVTVSVIDQGHGITEDVAARLFSPFFSTKAE-GMG 634 M S L +S + DG V +SV D G GI ++ A +F FF+TK + G G Sbjct: 581 MKDGGS----LTISTSDWQEADGKRGVAISVADTGSGIRKEDIAHIFDAFFTTKRQGGTG 636 Query: 635 MGLNICRTTIEFHGGTLTYTDNPAGGTIFRFSLPA 669 +GL+I T + +GGT+T GT F L A Sbjct: 637 LGLSISYTLVARYGGTITVRSEEGAGTEFTVRLLA 671 >gi|152981064|ref|YP_001351846.1| two component sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 763 Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 16/215 (7%) Query: 446 GEIASTLAHELNQPLAAISSYTTGALNMMQQG---QAEPRALQPALEKIHAQAQRAGHVI 502 GE+A LAHE+ PL I + L+M +G +A+ + L+ + E I Q ++ Sbjct: 529 GEVARRLAHEIKNPLTPIQ-LSAERLHMKLEGKLNEADAKVLERSTETIVNQVTAMKRMV 587 Query: 503 RSVHQFVKKREPARQRLQIRQLVDNVAPLIELQAQQFFVVLQWQVPKSLPAVLGDQVLLE 562 + K L + L++ + L + ++ + + LP ++GD L Sbjct: 588 DDFRDYAKTPPAVLSSLDLNALIEEILHL--YLSGDGRDIIHATLAQDLPLIMGDPTQLR 645 Query: 563 QVLLNLTRNGIQAMA-----AVPSARRILRVSAEL-TRNDDGAES--VTVSVIDQGHGIT 614 QV+ NL +N A+A A P+ RI ++ E+ R+ DGA S V +++ D G G T Sbjct: 646 QVIHNLLQNAQDAVADRGEQAAPA--RIDIITEEIHYRSSDGAVSNAVQLTITDNGPGFT 703 Query: 615 EDVAARLFSPFFSTKAEGMGMGLNICRTTIEFHGG 649 + A F P+ ++K G G+GL + + IE HGG Sbjct: 704 PKILAHAFEPYITSKPRGTGLGLAMVKKIIEEHGG 738 >gi|152982364|ref|YP_001355202.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 676 Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 28/261 (10%) Query: 419 ISERKRAEDLNRTQEEKLQASARLA--SMGEIASTLAHELNQPLAAISSYTTGALNMMQQ 476 ++ER +A L + EK A R A + + ++HEL PLA I + A NM ++ Sbjct: 414 VAERTQALLLAMEEVEKALAMERAAHEEQQQFIAMVSHELRTPLAVIDA---AAQNMTRE 470 Query: 477 GQAEPRALQPALEKIHAQAQRAG----HVIRS--VHQFVKKREPARQRLQIRQLVDNVAP 530 G+ LEKIH +R H + S + F +P L + L D V Sbjct: 471 GEQGSAKAPLRLEKIHRATERLSSLFTHYLSSERLKMFAHGIQPTNTTLHL-LLEDAVNM 529 Query: 531 LIELQAQQFFVVLQWQVPKSLPAVLGDQVLLEQVLLNLTRNGIQAMAAVPSARRILRVSA 590 L F++ V K + A D +L V+ L N ++ A S Sbjct: 530 AKPLADNHQFLIASEAVKKPVRA---DADILRLVISTLLNNAVKYTPAG---------ST 577 Query: 591 ELTRNDDGAESVTVSVIDQGHGITEDVAARLFSPFF----STKAEGMGMGLNICRTTIEF 646 + R + + + V D G GI D ++F+ ++ S G G+GL + R IE Sbjct: 578 VVLRAEPVSNGWHIDVTDNGPGIAADEREKIFNRYYRGRISGSKAGTGLGLTLARHLIER 637 Query: 647 HGGTLTYTDNPAGGTIFRFSL 667 HGGTL DNPAGG+ FR L Sbjct: 638 HGGTLELLDNPAGGSTFRIFL 658 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,439,548 Number of extensions: 57481 Number of successful extensions: 280 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 17 Length of query: 675 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 585 Effective length of database: 888,291 Effective search space: 519650235 Effective search space used: 519650235 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)