BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0704.p (196 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981441|ref|YP_001352157.1| two-components system response ... 293 7e-81 gi|152981398|ref|YP_001354111.1| two-components system response ... 112 1e-26 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 70 6e-14 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 64 4e-12 gi|152983037|ref|YP_001352599.1| two-component response regulato... 62 2e-11 >gi|152981441|ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 293 bits (749), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 145/197 (73%), Positives = 161/197 (81%), Gaps = 1/197 (0%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAATGYDSGMALMSAL-SAASGIDAEGECLLLDVRMP 59 MLHI+DDEE+IRDSL WLA+SR I AT YDSG A ++ L + +G+C+LLDVRMP Sbjct: 1 MLHIIDDEEVIRDSLMWLAKSRGIPATAYDSGKAFLTTLDTMPRATSPQGQCILLDVRMP 60 Query: 60 GNSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVL 119 SGVALF+ L +RGL PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+LMDR+ Sbjct: 61 EVSGVALFDLLTSRGLTQTFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRIQ 120 Query: 120 QALESSRAGSAEDAVQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHI 179 +AL SS SA A+ RLAALS REREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHI Sbjct: 121 EALASSEHASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHI 180 Query: 180 FDKMNVKTAVELARLLK 196 FDKMNVKTAVELARLLK Sbjct: 181 FDKMNVKTAVELARLLK 197 >gi|152981398|ref|YP_001354111.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 226 Score = 112 bits (280), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 13/201 (6%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAATGYDS-GMALMSALSAASGIDAEGECLLLDVRMP 59 ++ IVDD+ R +L L ++ Y S G L+S GI E C++LD+ MP Sbjct: 14 VIRIVDDDPSFRRALQRLLQTTGYRVLDYSSVGDMLLS------GIGNESGCIILDINMP 67 Query: 60 GNSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLM---D 116 G SG+ L L H P+IF+TG V ++ +K GA DFF KP + L+ D Sbjct: 68 GPSGLDLQEMLVADA--HPLPIIFITGEATVSDSIRAMKAGAADFFCKPLDSQALLCTLD 125 Query: 117 RVLQALESSRAGSAEDA-VQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVH 175 + L+ R S E ++ R A L++RE+EVL ++ G +NK I+ +L ++ RTV+ H Sbjct: 126 KTLKDAACKRKKSKELCDLEARYATLTSREKEVLAMVTRGALNKQISAKLDVAERTVKAH 185 Query: 176 RAHIFDKMNVKTAVELARLLK 196 RA + +KM VKT EL +++ Sbjct: 186 RAKVMEKMEVKTLAELVHVVE 206 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 70.5 bits (171), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 32/207 (15%) Query: 4 IVDDEEIIRDSLTW-LARSRNIAATGYDSGMALMSALSAASGIDA-----EGEC--LLLD 55 I DD I+R+ L LA +++I G+ A +GI+A EG C LLLD Sbjct: 11 IADDHAIVREGLKQILADTKDIVVAGH-----------AENGIEAIKLSREGACQVLLLD 59 Query: 56 VRMPGNSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLM 115 + MP SG+ + ++K + V+ L+ H + A+ LK GA + K +L+ Sbjct: 60 ISMPDRSGIEVLKQVKKES--PKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELV 117 Query: 116 DRVLQ----------ALESSRAGSAEDAVQGRL-AALSAREREVLDLILAGKMNKVIADE 164 + + Q AL A D + L LS RE + L +I +GK IA+E Sbjct: 118 NAIRQVAAGRKYISAALAQELANQISDDHETPLHETLSDREYQTLTMIASGKTVSDIANE 177 Query: 165 LGISMRTVEVHRAHIFDKMNVKTAVEL 191 L +S++T+ ++R+ + KM ++ EL Sbjct: 178 LVLSVKTISMYRSRLLQKMKLRHNAEL 204 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 64.3 bits (155), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 24/203 (11%) Query: 4 IVDDEEIIRDSLTWL-ARSRNIAATGYDS-GMALMSALSAASGIDAEGECLLLDVRMPGN 61 I DD IIRD L + + N+A G S G ++ L + + + L+LD+ MPG Sbjct: 6 IADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSL-----QVDVLVLDMSMPGR 60 Query: 62 SGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQA 121 SG+AL ++ + P++ L+ H + AV ++ GA + K +QL++ + + Sbjct: 61 SGIALIQQI--NAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGIRKV 118 Query: 122 LESSRAGSAEDAVQGRL-------------AALSAREREVLDLILAGKMNKVIADELGIS 168 E S E + +L L+ARE ++ +++ G IA L +S Sbjct: 119 AEGGTFVSPE--ISAKLIKQLHKPETDLPHTKLTAREFQIFSMLVEGHSVNDIAKILSLS 176 Query: 169 MRTVEVHRAHIFDKMNVKTAVEL 191 +T+ H+A + KM T L Sbjct: 177 NKTISTHKAAVLQKMEASTTASL 199 >gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 209 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 50 ECLLLDVRMPGNSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPF 109 + +LLD+ MPG SG L + ++++ ++ L+ H +V A L GA + K Sbjct: 49 DLILLDMTMPGISGATLIHHIRSQKTAPN--ILVLSMHDEVQFARRALDAGASGYITKDT 106 Query: 110 NDNQLMDRVLQALESSR---AGSAEDAV--QGRLAA-----LSAREREVLDLILAGKMNK 159 + L+D + + E R G AE+ + G A LS RE E+ L++ G+ Sbjct: 107 DPQTLIDAIHRVAEGGRFISRGLAEEMLFDHGTRARPSHELLSTREYEIFQLLVHGRGVN 166 Query: 160 VIADELGISMRTVEVHRAHIFDKMNVKTAVELAR 193 IADEL IS +TV H+ + +KM + +L R Sbjct: 167 EIADELSISNKTVSTHKTRLMEKMKCENVSQLIR 200 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 402,620 Number of extensions: 14619 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 12 Length of query: 196 Length of database: 1,221,021 Length adjustment: 78 Effective length of query: 118 Effective length of database: 932,655 Effective search space: 110053290 Effective search space used: 110053290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)