BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0700.p
         (453 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980575|ref|YP_001352154.1| N-acetylmuramoyl-L-alanine amid...   686   0.0  

>gi|152980575|ref|YP_001352154.1| N-acetylmuramoyl-L-alanine amidase
           [Janthinobacterium sp. Marseille]
          Length = 434

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/453 (74%), Positives = 383/453 (84%), Gaps = 21/453 (4%)

Query: 1   MSRSPEIRPQPVKSKTRRTILKAGGALFVSVITPLPAMASQILAVRVWPSEDYTRVTLEN 60
           MS S EIR +PVK+K RRT+LKAGG L +S+ +PLPA ASQILAVRVWPSEDYTRVTLEN
Sbjct: 1   MSESTEIRSKPVKAKVRRTVLKAGGTLLISLFSPLPAFASQILAVRVWPSEDYTRVTLEN 60

Query: 61  DSDLKVTHFVVKNPDRLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120
           D++LK  HF++K+P+RLVVD+EGIDLN TLK L+AKIQPNDPYIKQVRVGQNRP VVRLV
Sbjct: 61  DANLKTNHFIIKDPERLVVDVEGIDLNPTLKSLIAKIQPNDPYIKQVRVGQNRPGVVRLV 120

Query: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPATPPDPIAALIQKGEWNKDTPAAPPLAQGP 180
           FDLK+E+ PQVFTLAPV +Y++R V DLYP  PPDPIAALI+KG+W+ D P  P +    
Sbjct: 121 FDLKEEVNPQVFTLAPVDKYQHRLVFDLYPVNPPDPIAALIEKGQWSLDKPNEPTM---- 176

Query: 181 TPPSKPDPAPLAELKPQ-PDDKNERNPKVAPDEPRMQLTRMITIALDPGHGGEDPGATGA 239
                  P P+AE+KP   + KN+R P         Q++RM+TIALDPGHGGEDPGA G 
Sbjct: 177 -------PPPVAEVKPPFAEPKNDRAP---------QVSRMLTIALDPGHGGEDPGAVGR 220

Query: 240 RGNHEKDVVLSIAKRLKRKIEQHPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHA 299
            G++EK +VLSIAKRLK K+EQHPNMRVMLTRD D+FVPL  RV KARKVQADLFVSIHA
Sbjct: 221 GGSYEKHIVLSIAKRLKAKLEQHPNMRVMLTRDGDYFVPLHVRVQKARKVQADLFVSIHA 280

Query: 300 DAFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLST 359
           DAFVQPTA GSSVFALSEKGASSTAARWLANKEN+ADLIGG NIK HD+QLASVLLDLST
Sbjct: 281 DAFVQPTANGSSVFALSEKGASSTAARWLANKENAADLIGGTNIKNHDKQLASVLLDLST 340

Query: 360 TAQINDSLRVGNAVLKEIGGINKLHKGSVEQAGFAVLKAPDIPSILIETAFISNPEEEAK 419
           TAQINDSLR+G AVL EIGG+N+LHK +VEQAGFAVLKAPDIPSILIETAFISNPEEEAK
Sbjct: 341 TAQINDSLRLGKAVLNEIGGVNRLHKNAVEQAGFAVLKAPDIPSILIETAFISNPEEEAK 400

Query: 420 LTDDHYQDQMADAILTGIRNYFAKNPPLAKNRM 452
           L DD YQD+MADA+  GIR YFAKNPPLAK+RM
Sbjct: 401 LNDDAYQDRMADAVAQGIRKYFAKNPPLAKSRM 433


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,071,832
Number of extensions: 45666
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 367
Effective length of database: 903,079
Effective search space: 331429993
Effective search space used: 331429993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)