BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0699.p
         (228 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980755|ref|YP_001352153.1| membrane-associated protein ded...   278   2e-76
gi|152980844|ref|YP_001353992.1| dedA family protein [Janthinoba...    62   2e-11

>gi|152980755|ref|YP_001352153.1| membrane-associated protein dedA
           [Janthinobacterium sp. Marseille]
          Length = 214

 Score =  278 bits (711), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/214 (63%), Positives = 176/214 (82%)

Query: 9   MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF 68
           MD++Q  D+++HVDKYLG  I QYG LIY VLF I+F ETGLVV P LPGD+LLFIAG F
Sbjct: 1   MDFMQFFDMILHVDKYLGTFIAQYGMLIYVVLFAIIFSETGLVVFPLLPGDTLLFIAGAF 60

Query: 69  CAMGAMDIWLLMSLLVAAAVAGNTLNYWIGGWVGHRVYTHNYRWLNPEAIRKTHAFYEKH 128
           CA G+M++WLL+ LL+AAA+ GNT+NYWIG  +G +V+TH+YRWL+ +A+RKTH FYEKH
Sbjct: 61  CASGSMNLWLLLGLLMAAAILGNTVNYWIGHAIGEKVFTHDYRWLDRDALRKTHTFYEKH 120

Query: 129 GGKTIVIARFTPIVRTFAPFIAGVSAMSFGRFQLFNVLGAFLWVVGLVVLGYLFGNIPVV 188
           GGKT+++ARF PI RTFAPFIAGVS M+F RFQLFN +GA LWV  LVV GYLFGNIP++
Sbjct: 121 GGKTLILARFIPIARTFAPFIAGVSEMTFFRFQLFNCIGAVLWVGLLVVGGYLFGNIPII 180

Query: 189 QQNLNTLVLVGLIGAVIPIVLGVLWQLWRKLRGK 222
           + +LNT+VL+G+  A +P+ LG LW++ ++ + K
Sbjct: 181 RDHLNTIVLIGVGAAAVPVALGALWKVLQRFKNK 214


>gi|152980844|ref|YP_001353992.1| dedA family protein
           [Janthinobacterium sp. Marseille]
          Length = 199

 Score = 62.4 bits (150), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 37  YAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCAMGAMDIWLLMSLLVAAAVAGNTLNYW 96
           Y  +FL++  E    V P +P + ++ +AG   A G ++I++++ +  A +V G    Y+
Sbjct: 14  YLGIFLLMLAEN---VFPPIPSELIMPLAGFVAARGELNIFVVILVGTAGSVVGALPWYY 70

Query: 97  IGGWVGH----RVYTHNYRWL--NPEAIRKTHAFYEKHGGKTIVIARFTPIVRTFAPFIA 150
            G   G     R+   + RWL  +P  I K   ++E+H    +   R  P +RT     A
Sbjct: 71  AGALFGKERLKRLAARHGRWLTVSPGDIDKASGWFERHDAAAVFFGRLIPAIRTLISVPA 130

Query: 151 GVSAMSFGRFQLFNVLGAFLWVVGLVVLGYLF-GNIPVVQQNLNTL 195
           G   M    F L++ +G+ +W   L + GYL      VVQ  ++ +
Sbjct: 131 GGVKMPMLPFLLYSTVGSLIWTSFLALTGYLLQSQYEVVQHYVDPV 176


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.147    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 474,087
Number of extensions: 16618
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 228
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 148
Effective length of database: 925,261
Effective search space: 136938628
Effective search space used: 136938628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)