BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0697.p (633 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis pro... 440 e-124 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 360 e-100 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 357 1e-99 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 345 3e-96 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 344 1e-95 >gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 662 Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust. Identities = 249/451 (55%), Positives = 330/451 (73%), Gaps = 4/451 (0%) Query: 183 IIAALYVGIDISADVKALKDQIKSLKIGATGNFFALNGREGKDQGVMIAGAAREGKEEGG 242 +IA + + +S D +K ++ +LK+G +G ++ L+ +GKD G ++ A +EG+ Sbjct: 52 VIAKAQLVLGMSQDPVLIKQKLLALKVGQSGQYYVLDANQGKDLGKLLIAAQKEGQ---- 107 Query: 243 NLLEAKDASGDTYIKTLVQQKQGELRYTAADGRKKIAVFTHYAPWNWVIVGEAAVDEITS 302 N L K A G +IK ++ QK+G LRYT A G ++IA FT+ NWV+VG+ V E T Sbjct: 108 NALANKAADGREFIKDILAQKEGSLRYTDASGAERIASFTYAQDKNWVVVGDTYVGEFTQ 167 Query: 303 EVNDMRNLYVGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVHSS 362 E +RN++ L+ VLA +L I M+ RPL A ++A GDLT R+ + Sbjct: 168 EATALRNIFAAAALIATLVLAALLYSAIRSMLLRPLAQATHTARKLATGDLTIRMENKRT 227 Query: 363 DEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETA 422 DE+G+L+ + N I GL+ VV ++R GT+ ++TA +EIAAGNL+LS+RTEQQA +LEETA Sbjct: 228 DEVGQLLASINSIGQGLANVVWNIRNGTKTLSTATNEIAAGNLDLSSRTEQQASSLEETA 287 Query: 423 SAMEELTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIIS 482 SAMEE+TSTVK+NAANA QA++LA +ASEVA GG VV +VV TMD+IN SS++IVDIIS Sbjct: 288 SAMEEMTSTVKENAANAEQANQLARTASEVAVKGGNVVAEVVNTMDSINQSSKKIVDIIS 347 Query: 483 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQ 542 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRS+AAA+EIK LI+ SV Sbjct: 348 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSSAAAREIKSLIEDSVN 407 Query: 543 TVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQ 602 V G +LV AG+TMN+VV+S++RV +++EI++ASREQS GI+Q+N+AIAQMD+ TQQ Sbjct: 408 KVQSGSKLVAHAGDTMNEVVASIKRVDNIMTEISSASREQSIGIEQVNQAIAQMDQVTQQ 467 Query: 603 NAALVEQAAAAAQSLQQQAERLAAAVSTFRV 633 NAALVEQAAAAA+SLQ Q L V F + Sbjct: 468 NAALVEQAAAAAESLQSQTTELNNVVDVFTI 498 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/300 (66%), Positives = 242/300 (80%) Query: 334 VTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEI 393 +TRPL AA R+AGGDLT + S DE G+L+ A ++ GL +V VR GTE I Sbjct: 215 ITRPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETI 274 Query: 394 NTAASEIAAGNLNLSARTEQQAGALEETASAMEELTSTVKQNAANAIQADELAGSASEVA 453 TA++EIAAGNL+LS+RTEQQA +LEETAS+MEELTSTVKQNA NA QA++LA SASEVA Sbjct: 275 TTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVA 334 Query: 454 SHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 513 GG+VV QVVQTM +IN SS++IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 335 LKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 514 VVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVIS 573 VVATEVR+LAQRSA+AAKEIK LI SV V G +LV +AG TM+++V+S++RV+ ++ Sbjct: 395 VVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMG 454 Query: 574 EITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAVSTFRV 633 EIT AS+EQS GI+QIN+AI QMD TQQNA+LVE+AAAAA+S+Q QA +L V F++ Sbjct: 455 EITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 357 bits (916), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 206/348 (59%), Positives = 270/348 (77%), Gaps = 3/348 (0%) Query: 289 WVIVGEAAVDEITSEVNDMRNLYVGL---GLLFLAVLAVILTVMINRMVTRPLDAVCQAA 345 ++ V A+D+I+ +++D + L + L +L ++I R +T+PL + A Sbjct: 167 FLSVQRKAIDQISRDIDDAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVA 226 Query: 346 DRIAGGDLTTRLHVHSSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNL 405 R A GDLT + S DEIG LM A G++ GL ++V+ V+AGT+ INTA++EIA GNL Sbjct: 227 SRAADGDLTGDIGKPSKDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNL 286 Query: 406 NLSARTEQQAGALEETASAMEELTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQ 465 +LS+RTEQQA +LEETAS+MEELTSTVKQNA NA QA++LA SAS+VA+ GG VV +++ Sbjct: 287 DLSSRTEQQAASLEETASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMIS 346 Query: 466 TMDAINSSSQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQR 525 TM AINSSS++IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQR Sbjct: 347 TMGAINSSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 406 Query: 526 SAAAAKEIKELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEG 585 SAAAAKEIK LI SV V G +LV++AG TM+DVV+S++ V+ +++EI AS+EQS G Sbjct: 407 SAAAAKEIKSLIGDSVSNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSG 466 Query: 586 IDQINRAIAQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAVSTFRV 633 I+Q+N AI+QMD+ TQQNAALVE+AAAA+QSL+ QA++LA V+ F++ Sbjct: 467 IEQVNTAISQMDQVTQQNAALVEEAAAASQSLRDQADKLAQIVNVFKL 514 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 345 bits (886), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 201/326 (61%), Positives = 255/326 (78%), Gaps = 1/326 (0%) Query: 308 RNLYVGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGR 367 R + + LG + L +L+ L +++R +TRPLD A +A GDL ++ S+DE G+ Sbjct: 191 RTILITLGSIAL-ILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQSSSNDETGQ 249 Query: 368 LMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETASAMEE 427 L+ A ++ GL + VS VR G E I TA+++IAAGNL+LS+RTE+QA +LEETAS+MEE Sbjct: 250 LLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEE 309 Query: 428 LTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGI 487 LTSTVKQNA NA QA++LA SAS VA GGEVV +VV TM+ IN+S+++IVDII VIDGI Sbjct: 310 LTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVDIIGVIDGI 369 Query: 488 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGG 547 AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAAAKEIK LI SV V G Sbjct: 370 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVELG 429 Query: 548 GQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALV 607 +LV +AG TM++VV SV+ V+ ++SEI AS+EQS GI+Q+N+AI QMD+ TQQNAALV Sbjct: 430 SKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALV 489 Query: 608 EQAAAAAQSLQQQAERLAAAVSTFRV 633 E+AAAAA+SL +QA +LA AVS F++ Sbjct: 490 EEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 344 bits (882), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 197/324 (60%), Positives = 251/324 (77%) Query: 310 LYVGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGRLM 369 L +G+ + ++A + V+ R +TRPL A ++A GDLT + V S DE G+L+ Sbjct: 188 LLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDETGQLL 247 Query: 370 GAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETASAMEELT 429 A ++ GL ++V+ VR GT+ I +A+ +IA GNL+LS+RTEQQA +LEETAS+MEELT Sbjct: 248 QALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASSMEELT 307 Query: 430 STVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAF 489 STVKQNA NA Q+++LA SASEVA GG VV +VV TM IN S+++IVDII VIDGIAF Sbjct: 308 STVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVIDGIAF 367 Query: 490 QTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQ 549 QTNILALNAAVEAARAGEQGRGFAVVA+EVRTLAQRSA+AAKEIKELI SV V+ G + Sbjct: 368 QTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKVSIGSR 427 Query: 550 LVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQ 609 LV AG TM +VV SV+RV+ ++SEIT AS+EQ++GI+QIN+A+ QMD+ TQQNAALVE+ Sbjct: 428 LVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEE 487 Query: 610 AAAAAQSLQQQAERLAAAVSTFRV 633 AAAAA+SLQ QA L+ V F++ Sbjct: 488 AAAAAESLQGQASHLSQVVGVFKL 511 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,127,787 Number of extensions: 41804 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 21 Length of query: 633 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 544 Effective length of database: 891,988 Effective search space: 485241472 Effective search space used: 485241472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)