BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0696.p
         (645 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980279|ref|YP_001352152.1| DNA mismatch repair protein [Ja...   949   0.0  

>gi|152980279|ref|YP_001352152.1| DNA mismatch repair protein
           [Janthinobacterium sp. Marseille]
          Length = 613

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/636 (75%), Positives = 529/636 (83%), Gaps = 36/636 (5%)

Query: 16  YRPIQALPDQLISQIAAGEVIERPSAVVKELLENAIDAGSTQITVRLEQGGVKRIAITDN 75
           +RPIQ L DQLISQIAAGEV+ERPSAVVKELLENA+DAG+T ITVRLEQGGVKRIAITDN
Sbjct: 8   FRPIQPLSDQLISQIAAGEVVERPSAVVKELLENALDAGATAITVRLEQGGVKRIAITDN 67

Query: 76  GRGIPPDQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADAPH 135
           GRGI P+QLPLALARHATSKI SL +LENV TLGFRGEALASIASVAQLT+TSRTADA H
Sbjct: 68  GRGITPEQLPLALARHATSKINSLNELENVGTLGFRGEALASIASVAQLTLTSRTADAQH 127

Query: 136 AWEITG----SQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRI 191
           AWEI+G     Q  TVAP+SGA GTT+DVQDLYFNTPARRKFLK+EQTE+GHCAEVVRRI
Sbjct: 128 AWEISGVQGSDQKNTVAPSSGAPGTTVDVQDLYFNTPARRKFLKTEQTEFGHCAEVVRRI 187

Query: 192 ALARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGL 251
           AL+RPDV+FSLSHNGKTVDHW V + AKRSAHILG EF+ ARLPL+E+AGPL LHGF+GL
Sbjct: 188 ALSRPDVAFSLSHNGKTVDHWAVNDIAKRSAHILGSEFSGARLPLEETAGPLHLHGFIGL 247

Query: 252 PTASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPSYALSLTLDPALVDVNV 311
           PTASKAR D QYFYVNGRFVRDKLL HAVR+AYQDVLHGDRYPSY +SL LDPALVDVNV
Sbjct: 248 PTASKARGDAQYFYVNGRFVRDKLLMHAVRSAYQDVLHGDRYPSYVISLDLDPALVDVNV 307

Query: 312 HPSKIEVRFRDSRAVHQFVFHAVSRTLAQTSAVSFGNLPQQPGEASEELAVQPAATGPNA 371
           HPSKIEVRFRDSR+VHQFVFHAVSR LAQTSA +FG +P          +  PA   P+ 
Sbjct: 308 HPSKIEVRFRDSRSVHQFVFHAVSRALAQTSATAFGAVP----------SPTPA---PSG 354

Query: 372 PLPWTREQKQQSFSAQFAEQPRPFSFGGNSGFGIRQDRAAYGNMFRNEPTSDADGGAATR 431
            LPW REQ+Q +F+ QF +Q           +G+ Q  A YG +F      + DG     
Sbjct: 355 ALPWLREQQQTTFAPQFQQQ-----------YGVAQTTANYGALF------NTDGAVTPL 397

Query: 432 GT--ADQFSSAPAPVAAPLPEGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILY 489
           GT  A  F++     A  + + +FPLGFALAQLHGI++LAQN  GLV+VDMHAAHERILY
Sbjct: 398 GTEPAPAFAAFTNSPAQTMSDDEFPLGFALAQLHGIFILAQNTKGLVLVDMHAAHERILY 457

Query: 490 EQLKTALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAV 549
           EQLK ALD N M VQPLLIP+TFYAD VEVGT E+ +ETL +LGFDIAVMSPTTLA+RAV
Sbjct: 458 EQLKNALDDNAMQVQPLLIPITFYADDVEVGTAEDSKETLLSLGFDIAVMSPTTLAIRAV 517

Query: 550 PALLKNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNAL 609
           P LLKNADAQ+LARDVLRDVREYGGSRVL+ERRNELLGTLACHTAVRANR LT PEMNAL
Sbjct: 518 PTLLKNADAQSLARDVLRDVREYGGSRVLVERRNELLGTLACHTAVRANRMLTGPEMNAL 577

Query: 610 LRQMEATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 645
           LRQMEATER+DQCNHGRPTW Q+GLSDLDKLF RG+
Sbjct: 578 LRQMEATERADQCNHGRPTWVQLGLSDLDKLFERGR 613


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,446,692
Number of extensions: 59417
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 556
Effective length of database: 891,988
Effective search space: 495945328
Effective search space used: 495945328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)