BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0695.p
         (318 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979929|ref|YP_001352151.1| tRNA delta(2)-isopentenylpyroph...   460   e-131

>gi|152979929|ref|YP_001352151.1| tRNA
           delta(2)-isopentenylpyrophosphate transferase
           [Janthinobacterium sp. Marseille]
          Length = 314

 Score =  460 bits (1184), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/311 (73%), Positives = 258/311 (82%), Gaps = 2/311 (0%)

Query: 6   PLAIAIMGPTASGKTAAALEIARHLPCEIISVDSALVYRGMDIGTAKPSAEELAAVPHHL 65
           PL ++IMGPTASGKTAAAL +A  +P EIISVDSALVYR MDIGTAKPSAEELA VPHHL
Sbjct: 5   PLVVSIMGPTASGKTAAALAVAEKIPAEIISVDSALVYREMDIGTAKPSAEELAQVPHHL 64

Query: 66  IDIIDPTAAYSAMQFRQDALRLTREIAARGKLPLLVGGTMLYFKVLRDGLDELPQADPAL 125
           IDI+DP  +YS MQFRQDA+RL  EI+ARGKLPLLVGGTMLYFK L+DGLD LPQAD AL
Sbjct: 65  IDILDPLDSYSVMQFRQDAIRLAAEISARGKLPLLVGGTMLYFKGLKDGLDALPQADAAL 124

Query: 126 RAQLDQQAAEFGMPAMHARLAALDPVTAARLKPTDSQRIQRALEITLLTGQPMSSLLSQK 185
           RA+LD +AA  G PAMHA+LAALDP+TA RLKP DSQRIQRALEI  LTGQPMS+LL+Q 
Sbjct: 125 RAELDAEAAAIGYPAMHAKLAALDPITAERLKPNDSQRIQRALEIIALTGQPMSALLAQA 184

Query: 186 PAEPLPFELLPLALEPSERAVLHERIALRFDLMLRDGALQREVATLRERGDLHLGLPSMR 245
           P   LPF LLP+ALEPS+R+VLH RIA RFD ML+ GAL  EV  LR RGDLHLGLPSMR
Sbjct: 185 PKTELPFTLLPIALEPSDRSVLHTRIATRFDAMLKGGALLDEVKALRARGDLHLGLPSMR 244

Query: 246 CVGYRQMWEYLDGSIDAATLREKGIAATRQLAKRQLTWLRSMPERISIDCNRPDATAEVL 305
           CVGYRQ WEYLDG+   A LRE+GIAATRQLAKRQLTWLRSM +R  IDC  PDA+  +L
Sbjct: 245 CVGYRQSWEYLDGAYSLAELRERGIAATRQLAKRQLTWLRSMDDRHIIDCLAPDASGAIL 304

Query: 306 MQVRQAVAEHR 316
            Q+   +A++R
Sbjct: 305 QQIE--IAQNR 313


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 673,527
Number of extensions: 26288
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 235
Effective length of database: 914,170
Effective search space: 214829950
Effective search space used: 214829950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)