BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0694.p (379 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 154 1e-38 gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 147 1e-36 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 124 8e-30 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 115 4e-27 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 113 2e-26 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 154 bits (388), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 187 ERTHDLAQANERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFIDVDWFK 246 E L ++N L+ L+ TDGLTGIANRR FD+ L EW+R+ R + L++ IDVD FK Sbjct: 158 ESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLSAEWKRARREQQELSILLIDVDNFK 217 Query: 247 PYNDHYGHVAGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGLQIVQRM 306 YND YGHVAGD VL+QVA++L+ + R + AR+GGEEFA+I+ T + +++ Sbjct: 218 LYNDTYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGSNGAVISGKKV 277 Query: 307 CDAIYALDLPHAGSLLGR-LTISCGVASCIPAHPEARLETLMQAADAALYQAKTAGRNRV 365 C A+ AL +PHA + +G LT+S G A+ P E L++ AD LY+AK G++RV Sbjct: 278 CAAVEALRIPHAHAAIGEWLTVSVGAATITP-QAEQVPNDLIELADKRLYRAKELGKHRV 336 Query: 366 L 366 + Sbjct: 337 I 337 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 2/175 (1%) Query: 192 LAQANERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFIDVDWFKPYNDH 251 L + L +LS DGLTG+ANRR FD L+ EW ++ RPL++ +D+D+FK YNDH Sbjct: 136 LIDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKRPLSIILLDIDYFKQYNDH 195 Query: 252 YGHVAGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGLQIVQRMCDAIY 311 YGH+ GD L+QVA+TL R + R+GGEEF +I+ +T+ + L + +R I+ Sbjct: 196 YGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALTVAERCRMLIF 255 Query: 312 ALDLPHAGSLLGR-LTISCGVASCIPAHPEARLETLMQAADAALYQAKTAGRNRV 365 +PH S + + LTIS GV + IP++ + L+ ++ AD LY AK GRN + Sbjct: 256 KEQIPHEKSAVSQLLTISLGVHTVIPSYGDEALK-FIEEADRRLYLAKQKGRNCI 309 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 124 bits (311), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 112/208 (53%), Gaps = 4/208 (1%) Query: 158 AQNRALYAQLEQEKESLRLLNKSLELRIAERTHDLAQANERLRSLSLTDGLTGIANRRSF 217 A +A+ Q Q E LR LE ++ERT +L +A + LS D LTG NRR F Sbjct: 400 AAEKAIIEQKLQSNELLRQAKDDLERIVSERTAELRKARDEAERLSRVDALTGAFNRRYF 459 Query: 218 DETLDQEWRRSVRHARPLTVAFIDVDWFKPYNDHYGHVAGDAVLRQVAQTLQETIGRAGE 277 +E E+ + R +PL+V D+D FK ND+YGH AGD V++ A+ + + R + Sbjct: 460 NEVAALEFAKVRRLHQPLSVISFDIDLFKQINDNYGHAAGDEVIKAAARVSRNAV-REID 518 Query: 278 TVARYGGEEFAVIVSDTDGQHGLQIVQRMCDAIYALDLPHAGSLLGRLTISCGVASCIPA 337 VAR GGEEFA+++ + + +R+ + + A + + G LL T S GVA Sbjct: 519 FVARIGGEEFAILLPGSTIEQAAATAERLRELVIAEQVSYQGKLLA-FTASFGVAQL--K 575 Query: 338 HPEARLETLMQAADAALYQAKTAGRNRV 365 + E L+Q AD +Y+AK GRNRV Sbjct: 576 DSDQSFEALLQRADEMMYRAKNLGRNRV 603 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 5/181 (2%) Query: 188 RTHDLAQANERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFIDVDWFKP 247 R H+L E++ L D LTG NRR D+ L++E R+ R A PL +A +D+D FK Sbjct: 352 RIHNLELQLEQMSELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDDFKK 411 Query: 248 YNDHYGHVAGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGLQIVQRMC 307 ND YGH+AGD L + + +++T+ R + +AR+GGEEF +++ DT + + + R+ Sbjct: 412 INDKYGHMAGDEALIHLVRVIKDTL-RTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQ 470 Query: 308 DAIYALDLPHAGSLLGRLTISCGVASCIPAHPEARLETLMQAADAALYQAKTAGRNRVLM 367 + H + L +T S GVA +A +++ AD ALY+AK AG+NRV+ Sbjct: 471 RELTKQIFMHNHTRL-LMTFSAGVALRKEREDQA---AMVKRADIALYEAKKAGKNRVIP 526 Query: 368 A 368 A Sbjct: 527 A 527 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 4/176 (2%) Query: 196 NERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFIDVDWFKPYNDHYGHV 255 NERL+ + LTD LTG+ NRR + L +E R+ RH L+ +ID+D FK ND++GH Sbjct: 177 NERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQ 236 Query: 256 AGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGLQIVQRMCDAIYALDL 315 GD VL +VA ++ + R + + R+GGEEF V++ D L + +R+ ++ + Sbjct: 237 GGDEVLCEVANRIKAEL-RLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPI 295 Query: 316 PHAGSLLGRLTISCGVASCIPAHPE---ARLETLMQAADAALYQAKTAGRNRVLMA 368 + R T+S GVAS A + A + L+ AD ALYQAK GRN+V+ A Sbjct: 296 VLSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKVISA 351 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 840,461 Number of extensions: 33723 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 29 Length of query: 379 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 294 Effective length of database: 906,776 Effective search space: 266592144 Effective search space used: 266592144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)