BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0692.p
         (336 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino a...    56   3e-09

>gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino acid
           transport system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 538

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 160 GTTVLNSDIPSFEWIGNGDFLRVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAA 219
           G TVL S + S+  I          +I+ A+ VVL  W+IL KT LG+ + A+  N + A
Sbjct: 375 GVTVLGSLVLSYNRI---------VIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMA 425

Query: 220 RLTGIRVGLVLLFVYSISGLFSGLAGAMSASRLYGANGNWGSGYELDAIAAVVLGGTSLM 279
              G+  G + +  + +    +GL G ++ S+L     + G GY +D+   VVL      
Sbjct: 426 ACVGVSTGKIDMMTFGLGCGIAGL-GGVALSQLGNVGPDLGQGYIVDSFMVVVL------ 478

Query: 280 GGVGTIWGTVVGALIIGVMNNGLTILGLSSFWQYVAKGAVIVLAVILDKWRQK 332
           GGVG + GTV+ A  +G +N  L  +        +AK A++V  +I  + R +
Sbjct: 479 GGVGQLAGTVIAAFGLGEVNKFLEPVA----GAVLAKIAILVFIIIFIQKRPQ 527


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 626,803
Number of extensions: 22589
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 252
Effective length of database: 910,473
Effective search space: 229439196
Effective search space used: 229439196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)