BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0687.p (302 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982397|ref|YP_001353609.1| LysR family transcriptional reg... 124 8e-30 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 92 3e-20 gi|152981642|ref|YP_001352457.1| LysR family transcriptional reg... 79 3e-16 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 78 6e-16 gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 78 7e-16 >gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 124 bits (310), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 131/284 (46%), Gaps = 7/284 (2%) Query: 23 DWESLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLG 82 +W LR F A G+ AAR LG T T+GRRL+ LE A+ LF R + LT G Sbjct: 3 EWSDLRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTDEG 62 Query: 83 ESVLNAAHAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALD 142 +VL A M ++ R LAG+D +LEG LR+ +D GT LAP L P + Sbjct: 63 AAVLIHAERMADEAEAFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPRVT 122 Query: 143 VEFALAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSANVAAWRRSRKSA 202 +E + SLARREADLA R + ++ AR L + + L + Sbjct: 123 IELLTDARVFSLARREADLAFRIQPFDEADVAARKLLHMPYGLYAAKGMARPQAGDGAGS 182 Query: 203 PFVAYDDGVPDIPETRWIATHAAGNPVRFRSTSLVAQCMAARAGVGLALLPSYL--LAPE 260 V D P+ W+ + RS + Q G GLA+LP L P Sbjct: 183 MLVTMDTAFDGAPDAVWLKRLLPHAQIALRSNNRDVQAQMCAHGAGLAVLPRLLGDKFPG 242 Query: 261 LQTV---ESTPQLERELWAVFHRDLKALPRLRAVLGWLQDCCAE 301 L V E+ P R+ W +H+DL+ L RLR++L L + A+ Sbjct: 243 LDLVDLGEAPPG--RDTWLGYHKDLRQLARLRSLLDLLIERLAD 284 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 87/167 (52%) Query: 24 WESLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGE 83 +ES+ +DAGSFSGAAR LG+ AT+ R++ +LET L+ + R ++ +T G+ Sbjct: 5 FESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEAGQ 64 Query: 84 SVLNAAHAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALDV 143 + + A + E+ + R ++GE +G L + G + P + L+ +P ++V Sbjct: 65 AYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDINV 124 Query: 144 EFALAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSA 190 LA V L D+A+R G+ D ++A +G + +C + A Sbjct: 125 RVVLADHVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPA 171 >gi|152981642|ref|YP_001352457.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 79.3 bits (194), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 25/272 (9%) Query: 25 ESLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGES 84 E LR F A D+ SF AA LG + I R +++LE A+ LF R +++T G Sbjct: 6 EMLRLFCAAADSNSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITEFGTH 65 Query: 85 VLNAAHAMQEQTRQLARTLAG--------EDLRLEGKLRLACTDAIGTLFLAPRLPALLE 136 + E R++ + G D L G +R+ IG L L L+ Sbjct: 66 -------LAEHAREMVTGVDGLFHHSDRQSDKDLAGLVRITAPSIIGRHHLLQSLLPLIN 118 Query: 137 QWPALDVEFALAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSANVAAWR 196 + P L +E + + + ++ D+ +R G+ +D +AR++ + FY+ GT VAA Sbjct: 119 RHPGLRLELGVTNLVADVVDKKIDIGVRIGQLRDSSFVARSVAKISFYIVGTPELVAARG 178 Query: 197 RSR-----KSAPFVAYDDGVPDIPETRWIATHAAGNPV--RFRSTSLVAQCMAARAGVGL 249 + + P A DG + A + P F + +C A AGVG Sbjct: 179 KPKTPQDLSKLPTTALMDGNTGRIWPWYFADNHLLTPTASTFVTDDPEVECNAVLAGVGY 238 Query: 250 ALLPSYLLAPEL---QTVESTPQLERELWAVF 278 L S+ P + Q V + + E W ++ Sbjct: 239 GQLSSHQAEPYIRSGQLVTVLDEYQPEPWDMY 270 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 78.2 bits (191), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 73/153 (47%) Query: 26 SLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGESV 85 S+ F +AGSF+ AA GVT A + R + +LE L LF+R ++ LT G Sbjct: 12 SIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVY 71 Query: 86 LNAAHAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALDVEF 145 Q R ++G L+ G LR++ G L P LP +++P + VE Sbjct: 72 FEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEV 131 Query: 146 ALAHQTVSLARREADLALRFGKPQDGELIARAL 178 ++++ + A DLA+R P D LIAR L Sbjct: 132 HISNRNIDFAEEAYDLAIRGRAPTDSNLIARKL 164 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 78.2 bits (191), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 17/284 (5%) Query: 26 SLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGESV 85 +++ F +D+GS S AA L ++ + R L +LE A L R ++ LT G + Sbjct: 6 AMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTAAGAEM 65 Query: 86 LNAAHAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALDVEF 145 L M E + +A + +G LR+ + + G LA + ++ +P + V+ Sbjct: 66 LPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPGVTVDM 125 Query: 146 ALAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSANVAAWRRSRKSAPFV 205 + + V+L DLA+R K D LIAR L R +C A + + ++ V Sbjct: 126 LVLDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQAEQLV 185 Query: 206 AYDDGVPDIPETRW--------IATHAAGNPVRFRSTSLVAQCMAARAGVGLALLPSYLL 257 ++ + W + GN ++SL+ AA AG G+A+LP++L Sbjct: 186 LHNCLTHSYYGSVWLLERDKLPVNVAVKGNISANDASSLLP---AALAGAGIAMLPTFLA 242 Query: 258 APELQTVESTPQL------ERELWAVFHRDLKALPRLRAVLGWL 295 AP +++ + P L E L+ V+ LR +L +L Sbjct: 243 APYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFL 286 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 712,861 Number of extensions: 28678 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 22 Length of query: 302 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 219 Effective length of database: 914,170 Effective search space: 200203230 Effective search space used: 200203230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)