BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0686.p
         (446 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979971|ref|YP_001352121.1| tRNA modifying enzyme [Janthino...   753   0.0  
gi|152981113|ref|YP_001353088.1| MiaB-like tRNA modifying enzyme...   142   6e-35

>gi|152979971|ref|YP_001352121.1| tRNA modifying enzyme
           [Janthinobacterium sp. Marseille]
          Length = 446

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/446 (78%), Positives = 402/446 (90%)

Query: 1   MQKKVFIKTFGCQMNEYDSDKMADVLNVAEGLIKTDRPEEADVILLNTCSIREKAQEKVF 60
           MQKK++IKTFGCQMNEYDSDKM DVLN +EGLIKTD PE+ADVILLNTCS+REKAQEKVF
Sbjct: 1   MQKKIYIKTFGCQMNEYDSDKMVDVLNASEGLIKTDTPEDADVILLNTCSVREKAQEKVF 60

Query: 61  SDLGRLRALKKDKPDLLIGVGGCVASQEGEAIIKRAPFVDMVFGPQTLHRLPQMISERRY 120
           SDLGRLR LK + PDL+IGVGGCVASQEG+AI+KRAP+VD+VFGPQTLHRLP+M+ +RR 
Sbjct: 61  SDLGRLRELKFNNPDLVIGVGGCVASQEGDAIVKRAPYVDLVFGPQTLHRLPEMLKQRRS 120

Query: 121 SGRPQVDISFPEIEKFDHLPPARVEGATAYVSIMEGCSKYCSYCVVPYTRGEEVSRRFED 180
           +GR QVDISFPEIEKFDH+PPA+VEGATA+VSIMEGCSKYCSYCVVPYTRGEEVSRRFED
Sbjct: 121 TGRSQVDISFPEIEKFDHMPPAKVEGATAFVSIMEGCSKYCSYCVVPYTRGEEVSRRFED 180

Query: 181 VLTEVAGLADQGVKEIMLLGQNVNAYRGTMEDGEIADFALLIEYIAELPGIERIRFVTSH 240
           VL EVAGL  QGVKEI LLGQNVNAYRG M DGEIADFALLIEYIAEL GIERIRFVTSH
Sbjct: 181 VLAEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAELEGIERIRFVTSH 240

Query: 241 PKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEYKSVIRRMRKVRPDI 300
           PKEF+QRLID YAKVPKL NHLYLPAQHGSDR LAAMKRGYT+LEYKS++RR+R+VRP+I
Sbjct: 241 PKEFTQRLIDAYAKVPKLVNHLYLPAQHGSDRILAAMKRGYTSLEYKSILRRLREVRPNI 300

Query: 301 TVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSPRPGTPAANLQDDTPAEVKLA 360
           ++ SDFIVGFPGET+ DFEA+MKL+ D+G+DNSFSFIFSPRPGTPAANL+DDTP EVKL 
Sbjct: 301 SISSDFIVGFPGETDADFEAMMKLINDIGYDNSFSFIFSPRPGTPAANLEDDTPHEVKLQ 360

Query: 361 RLQRLQAALNDNAAKISAAQVGTVQRVLVEGVSKRREHELQGRTESNRVVNFDGGPNGQR 420
           RLQRLQA ++ N  + S   VGTVQR+LVEG SK+   ELQGRTE+NRVVNF  G +G R
Sbjct: 361 RLQRLQAVIDQNTRRYSDEMVGTVQRILVEGPSKKDPDELQGRTENNRVVNFAAGEHGAR 420

Query: 421 LIGQIIEVSITEAFPFSLRGQIVTQH 446
           LIGQ+++V+I ++F ++LRG+I+ + 
Sbjct: 421 LIGQMVDVNIVQSFAYTLRGEIIVKQ 446


>gi|152981113|ref|YP_001353088.1| MiaB-like tRNA modifying enzyme
           [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 214/451 (47%), Gaps = 37/451 (8%)

Query: 4   KVFIKTFGCQMNEYDSDKMADVLNVAEGLIKTDRPEEADVILLNTCSIREKAQEKVFSDL 63
           K+   + GC     DS+++   L  AEG       + AD++++NTC   + A ++    +
Sbjct: 10  KIGFVSLGCPKALVDSEQILTQLR-AEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAI 68

Query: 64  GRLRALKKDKPDLLIGVGGCVASQEGEAIIKRA-PFVDMVFGPQTLHRLPQMISERRYSG 122
           G   AL ++   ++ G  G     +G+ II++  P V  V GP  L  +  M +  ++  
Sbjct: 69  GE--ALHENGKVIVTGCLGAKKDADGDDIIQKVHPKVLAVTGPHALGEV--MDAVHKHMP 124

Query: 123 RPQVDISFPEIEKFDHLPPARVEGAT----AYVSIMEGCSKYCSYCVVPYTRGEEVSRRF 178
           +P           F  L PA+    T    AY+ I EGC+  CS+C++P  RG+ VSR  
Sbjct: 125 KPHA--------PFIDLVPAQGIKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPI 176

Query: 179 EDVLTEVAGLADQGVKEIMLLGQNVNAY------RGTMEDGEIADFAL--LIEYIAELP- 229
            DV+ E   L   GVKE++++ Q+ +AY      R    +G+     +  L+E + EL  
Sbjct: 177 ADVMMEAENLFKAGVKELLVISQDTSAYGVDVKFRMGFWNGKPVKTHMTQLVEALGELAK 236

Query: 230 ---GIERIRFVTSHPKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEY 286
                 R+ +V  +P      +I   A+  K+  +L +P QH     L  MKR  +  + 
Sbjct: 237 QYGAWVRLHYVYPYPH--VDAIIPMMAE-GKILPYLDVPLQHAHPDVLKRMKRPASGEKN 293

Query: 287 KSVIRRMRKVRPDITVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSPRPGTPA 346
              I+  R + PD+T++S FI GFPGET+ +FE L+  + +   D    F +SP  G  A
Sbjct: 294 IERIQAWRAMCPDLTIRSTFIAGFPGETDAEFEYLLDFLKEAEIDRLGCFAYSPVEGATA 353

Query: 347 ANLQDDTPAEVKLARLQRLQAALNDNAAKISAAQVGTVQRVLVEGVSKRREHELQG--RT 404
            +L +  P EV+  R  R+     + + K   A+VG   RVL++ V++       G    
Sbjct: 354 NDLPNAVPEEVREERRGRVMLLQEEISKKRLQAKVGKTMRVLLDEVNRNGGVARSGADAP 413

Query: 405 ESNRVVNFDGG--PNGQRLIGQIIEVSITEA 433
           E + VV       P+ +  +G+ I+V IT A
Sbjct: 414 EIDGVVYVKPPYEPHLKLKVGEFIDVKITGA 444


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 973,527
Number of extensions: 39172
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 446
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 360
Effective length of database: 903,079
Effective search space: 325108440
Effective search space used: 325108440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)