BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0681.p
         (303 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983462|ref|YP_001352116.1| glycyl-tRNA synthetase subunit ...   513   e-147

>gi|152983462|ref|YP_001352116.1| glycyl-tRNA synthetase subunit
           alpha [Janthinobacterium sp. Marseille]
          Length = 305

 Score =  513 bits (1322), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 242/302 (80%), Positives = 270/302 (89%), Gaps = 8/302 (2%)

Query: 1   MLTFQQIILKLQEYWDAQGCALLQPYDMEVGAGTSHTATFLRAIGPEPWRAAYVQPSRRP 60
           MLTFQQIIL LQ+YWDAQGCALLQPYDMEVGAGTSHTATFLRAIGPEPWRAAYVQPSRRP
Sbjct: 1   MLTFQQIILTLQKYWDAQGCALLQPYDMEVGAGTSHTATFLRAIGPEPWRAAYVQPSRRP 60

Query: 61  KDGRYGENPNRMQHYYQYQVVLKPAPENILDLYLGSLEALGLDLKQNDVRFVEDDWENPT 120
           KDGRYGENPNR+QHYYQYQVVLKPAP NIL+LYLGSLEALG DLK ND+RFVEDDWENPT
Sbjct: 61  KDGRYGENPNRLQHYYQYQVVLKPAPANILELYLGSLEALGFDLKANDIRFVEDDWENPT 120

Query: 121 LGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGIERLAMYLQGVENVYDLVW 180
           LGAWGLGWEVWLNGMEVTQFTYFQQVGG++CKP+ GEITYG+ERLAMYLQGV+NVYDL W
Sbjct: 121 LGAWGLGWEVWLNGMEVTQFTYFQQVGGINCKPITGEITYGLERLAMYLQGVDNVYDLRW 180

Query: 181 TEWTENGAKKHLTYGDVFHQNEVEQSTFNFEYSNTEFLFSLFTNYEAEAKRLMEVPLALP 240
           T+         L+YGDV+ QNE+EQST+NFE+S+ +FLF+ F  +E +A  L++  LALP
Sbjct: 181 TD--------KLSYGDVYKQNEIEQSTYNFEHSDADFLFTAFGAHEKQALNLIDNKLALP 232

Query: 241 AYEQVLKAAHTFNMLDARGAISVTERAAYIGRIRNLSRAVAQAYFESRERLGFPMLGTSK 300
           AYEQVLKAAHTFN+LDARGAISVTERAAYIGRIRNL+R+VA++Y +SR RLGFPM     
Sbjct: 233 AYEQVLKAAHTFNLLDARGAISVTERAAYIGRIRNLARSVARSYLDSRARLGFPMAKPEH 292

Query: 301 AA 302
           AA
Sbjct: 293 AA 294


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 736,254
Number of extensions: 30998
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 220
Effective length of database: 914,170
Effective search space: 201117400
Effective search space used: 201117400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)