BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0680.p
         (706 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980513|ref|YP_001352115.1| glycyl-tRNA synthetase, beta ch...   710   0.0  

>gi|152980513|ref|YP_001352115.1| glycyl-tRNA synthetase, beta chain
           [Janthinobacterium sp. Marseille]
          Length = 700

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/697 (56%), Positives = 482/697 (69%), Gaps = 17/697 (2%)

Query: 15  PPKALAKLGDAVANGIFNGLQSRGYLEADAVATAYATPRRLAVSISKVRAASPDKSIREK 74
           PPKAL K+G+A A  +   LQ++G L AD+V TA+A+PRRL V ++KV   + DK++ +K
Sbjct: 16  PPKALKKIGEAFAQTLQASLQTQGLLSADSVLTAFASPRRLGVHLTKVLEQADDKTVMQK 75

Query: 75  VLPVSVALDAEGRPSAPLVKKLAALAASTGATVITPDQLERAQDGKAESFFYTYTAKGSA 134
           ++P +V + A+G+ +  L+KKLAAL A   A       L+R  DGKAE  F+     G  
Sbjct: 76  LMPAAVGIGADGKATPALLKKLAALGADESAVA----GLKRESDGKAEVLFFNSVVTGVM 131

Query: 135 LAVGLQAALDESLSKLPIPKVMSYQRQFGRAAGETVHFVRPAHYLVALFGNDVVPINTLG 194
           L  GLQ AL+E+L KLPIPKVM+YQ   G    ETV+FVRPAH LVAL+G DV+ I+ LG
Sbjct: 132 LTDGLQKALEETLGKLPIPKVMAYQLADGW---ETVNFVRPAHGLVALYGADVLNISVLG 188

Query: 195 LDAGRTTLGHRFLSS-GALQIASPDAYVEALATQGKVIASFTERR-EKIRAALLAKAGAD 252
           L AG TT GHRF +    + I   D+Y + +AT+G VIASF ERR E +R    A A A 
Sbjct: 189 LHAGNTTHGHRFEAGIDPVYIRDADSYAKQIATEGAVIASFAERRAEIVRQLASAAAEAG 248

Query: 253 QVLMP---ESLLDEVTALVEWPVVYECKFEDEFLAVPQECLILTMQTNQKYFALTDANGR 309
             L P   E+LLDEVT LVE P V   +FE+ FL VPQECLILTM+ NQKYF L D+ G 
Sbjct: 249 SNLTPIEDEALLDEVTGLVERPNVLIGQFEEAFLEVPQECLILTMKANQKYFPLLDSKGG 308

Query: 310 LRSRFLIVSNLETDRPEHIIGGNERVVRPRLSDAKFFFEQDKKKTLAERVPQLANVVYHN 369
           L ++FLIVSN+       +IGGNERVVRPRL+DAKFFF+QD+KKTL  RV  L  VVYHN
Sbjct: 309 LSNKFLIVSNIRPADASTVIGGNERVVRPRLADAKFFFDQDRKKTLMSRVAGLDKVVYHN 368

Query: 370 KLGNQLQRTERVQALAGKIAALLGGDVTQAERGALLAKADLLTDMVGEFPELQGIMGTYY 429
           KLG Q +R  RV+A+A  IA  LG D  QA+  A LAKADLLTDMVGEFPELQGIMG YY
Sbjct: 369 KLGTQGERIARVRAIAQAIAGKLGVDAQQADTAAQLAKADLLTDMVGEFPELQGIMGRYY 428

Query: 430 ARHDGEPDEVALAASEHYQPRFAGDALPGTATGTAVALADKLETLVGIWGIGLQPTGDKD 489
           A HDG P  VA A  +HY+PRFAGD LP    G  VALADKLETLVG++ IG  PTGDKD
Sbjct: 429 ALHDGLPAAVADAIEDHYKPRFAGDELPRNPVGMVVALADKLETLVGLFSIGQVPTGDKD 488

Query: 490 PFALRRHALGVLRMLVEKRLPLSLNALLEAAVALFAGNPNFKDPRAEVQAFIHDRLRGLL 549
           PFALRRHALG++RML+E +L + +N L+ AA   F G     + R+ +  FI DRL   L
Sbjct: 489 PFALRRHALGIIRMLIEGKLDIGINDLITAAEKPFNGLS--AEHRSALLNFIFDRLANAL 546

Query: 550 RERGFAQNEVEAVVAQQPDVLDNVVERLQAVQAFAALPEAEALAAANKRITNILKKIEGV 609
           RE+G++  E++AV+A QP  L +V ERL AV+AFAALPEA +LAAANKR+ NILKK+EG 
Sbjct: 547 REQGYSAQEIDAVLALQPQRLADVAERLAAVRAFAALPEAASLAAANKRVGNILKKVEGT 606

Query: 610 AIDAHGAVQQNLLKEAAEQGLFAAMQTTRPQVEAAYAQGDFAGALKALAQLRQNVDAFFN 669
                  V   LLKE AE  L   + T +PQ EAA+A+GD+  +L+ALA LR  VDAFF+
Sbjct: 607 VA---AQVDTALLKEPAEIALNQTLTTVKPQAEAAFARGDYTASLQALAALRNPVDAFFD 663

Query: 670 DVMVNAEDEQLRKNRQALLAALHGMLNQVADISKLAA 706
            VMVNAED  LR NRQ LLA LH  +NQVADISKLAA
Sbjct: 664 GVMVNAEDIALRNNRQGLLATLHQAMNQVADISKLAA 700


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,452,375
Number of extensions: 57950
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 616
Effective length of database: 888,291
Effective search space: 547187256
Effective search space used: 547187256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)