BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0677.p
         (250 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981584|ref|YP_001352112.1| hypothetical protein mma_0422 [...   378   e-106

>gi|152981584|ref|YP_001352112.1| hypothetical protein mma_0422
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score =  378 bits (971), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 207/246 (84%)

Query: 5   SARPADGKRRIELGEHTIDFALLRSKRRTIGFLVSDEGLRVTAPKWVTLAEIDHAIREKQ 64
           SA    GKRR+ +GEH +D+ L+RSKRR+IGF++ D+GLR+TAPKWVTL EI++AI EKQ
Sbjct: 55  SAPVPHGKRRVHVGEHILDYTLVRSKRRSIGFMIDDDGLRITAPKWVTLTEIENAICEKQ 114

Query: 65  RWILTKLNERRERSARRLQPQMQWRDGATLPYLGQDITLRIRTGQRQAVLLDELTRELNI 124
           RWI TKLNERRE SARRLQPQM+WRDGATLPYLG DITLRI   Q   +  +  T+EL +
Sbjct: 115 RWIFTKLNERREHSARRLQPQMEWRDGATLPYLGHDITLRILGTQAAGIAYNADTKELTV 174

Query: 125 SLPADAGEQQLKDRVQGWLQARAEELFGKRLIIYADKLGVSYRSYALSSATTQWGSCTSD 184
            LP  A E+QLKDRVQGWLQ  A+ +F +RL +YA+KL VSY+S+ALSSA TQWGSCT+D
Sbjct: 175 CLPGAAAERQLKDRVQGWLQLEAKRIFAERLPVYAEKLNVSYQSFALSSAMTQWGSCTAD 234

Query: 185 ARIRLNWRLIHFALPLIDYVIAHELAHLREMNHSPRFWATVQSIFPEFESAKKALRDSAA 244
            +IRLNWRLIHFALPLIDYVIAHEL+HLREMNHSPRFWATVQS+FPEF +AKKALRD A 
Sbjct: 235 GKIRLNWRLIHFALPLIDYVIAHELSHLREMNHSPRFWATVQSVFPEFVAAKKALRDHAP 294

Query: 245 ETLPIF 250
           ETLPIF
Sbjct: 295 ETLPIF 300


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 573,032
Number of extensions: 22328
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 169
Effective length of database: 921,564
Effective search space: 155744316
Effective search space used: 155744316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)