BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0672.p (531 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 179 5e-46 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 171 1e-43 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 168 9e-43 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 165 6e-42 gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinoba... 164 1e-41 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 179 bits (453), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 140/237 (59%), Gaps = 4/237 (1%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 ++R A++ L QP + L TG I G E L RW+ P G+V P FI++AE+ GL+ Sbjct: 656 ELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETGLIIP 715 Query: 69 LLLQLLDTVADSLRHWP----ADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + +L T + W LR+A+NLS RQF SLLE + + GL L++ Sbjct: 716 IGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQETGLEARFLEI 775 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 E+TESS++ D ER + T+R + G LS+DDFGTG+SSL L+ +P D +KID SFVR Sbjct: 776 ELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRSFVRD 835 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAP 241 + + D IV ++ L +LK++V+AEGVET+ +L+ GC QG++ +P P Sbjct: 836 IAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPLP 892 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 139/246 (56%), Gaps = 6/246 (2%) Query: 10 IRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDTL 69 +R AL+ L A QP + L G + GFE+L RW+ P+ G++SP +FI +AE +G++ + Sbjct: 620 LRFALERNELSVAYQPKVLLADGSVQGFELLLRWNSPEYGLISPNEFIPIAETSGMVVPI 679 Query: 70 LLQLLDTVADSLRHWP------ADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQ 123 + ++ L W L +AIN+S RQ L TS ++ ++++ G+ ++ Sbjct: 680 GMWAMEQACKQLAAWQQQYPEMGSLTMAINVSMRQLLQTSFFSQVRDILNSSGVIPQMVE 739 Query: 124 LEITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVR 183 LE+TE+S + + +T++ + ++ G L+LDDFGTGYSSL LQ P D +KID +FVR Sbjct: 740 LELTETSAMANPLQTMENLSMLKKLGVRLALDDFGTGYSSLAYLQKLPIDILKIDKAFVR 799 Query: 184 TMDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLA 243 + + I+ + L Q+L + AEGVET LK+MGC GQGF P Sbjct: 800 GIGSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQELKKMGCNLGQGFLFSAPLTAQ 859 Query: 244 EAARLI 249 EA LI Sbjct: 860 EAEALI 865 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 168 bits (425), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 135/235 (57%), Gaps = 4/235 (1%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 D+R A++ G QP + LRTG+I G E L RW P+ G++ P+ FI +AE+ GL+ Sbjct: 697 DLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEETGLIVP 756 Query: 69 LLLQLLDTVADSLRHWP----ADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + ++ + W LR+++NLS RQF LLE ++ + LP L++ Sbjct: 757 IGAWVIREACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESIALALEETQLPPQCLEI 816 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 E+TES ++ D + + +R + G LS+DDFGTGYSSL+ L+ +P D +KID SFV Sbjct: 817 ELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVND 876 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRP 239 + DPD IV ++ L SL++ V+AEGVET L++ C+ QG+ RP Sbjct: 877 ITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFSRP 931 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 165 bits (417), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 10 IRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDTL 69 +R A+ QP + L + +I G E L RW+ G+VSP FI +AE+ GL+ L Sbjct: 454 LRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGLIIPL 513 Query: 70 LLQLLDTVADSLRHWP----ADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQLE 125 +L T R W + +++NLSPRQ ++E + ++ GL L+LE Sbjct: 514 GEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQHLELE 573 Query: 126 ITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRTM 185 ITES + D E++ + R G +SLDDFGTGYSSL+ L+ +P D +KID SFVR + Sbjct: 574 ITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDI 633 Query: 186 DQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLAEA 245 D DS IV A+ LG++L + V+AEG+ET L GC+ GQG+ + +P P Sbjct: 634 ATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPVPNKNF 693 Query: 246 ARLIEQ 251 L+ Q Sbjct: 694 VDLLTQ 699 >gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 459 Score = 164 bits (415), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 130/241 (53%), Gaps = 6/241 (2%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 D+R AL L QP GRI G E L RW P +G+VSP DFI +AE GL+ Sbjct: 191 DLRKALQDNQLMLYYQPQTG-NDGRIVGAEALLRWRHPVKGMVSPADFIPLAEQTGLILP 249 Query: 69 LLLQLLDTVADSLRHW-----PADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQ 123 + +L L W A L LAIN+S QF + ++ +V+ G L+ Sbjct: 250 IGHWVLGMACAQLISWSKHPATAQLSLAINVSALQFKQPDFVSQVVSVLDRSGADPHLLE 309 Query: 124 LEITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVR 183 LE+TES LV D + + A ++ G LSLDDFGTGYSSL+ L+ P D++KID SFVR Sbjct: 310 LELTESMLVNDVNDIIAKMNALKEKGLRLSLDDFGTGYSSLSYLKKLPLDQLKIDQSFVR 369 Query: 184 TMDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLA 243 M D + IV V L + + +HV+AEGVET L +GC QG+ L RP P A Sbjct: 370 DMLFDSNDVTIVRTVVELARGMGLHVIAEGVETQEQRQFLAELGCLSFQGYLLSRPVPNA 429 Query: 244 E 244 E Sbjct: 430 E 430 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,250,682 Number of extensions: 52165 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 15 Length of query: 531 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 443 Effective length of database: 895,685 Effective search space: 396788455 Effective search space used: 396788455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)