BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0669.p
         (340 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980362|ref|YP_001352109.1| 4-hydroxythreonine-4-phosphate ...   467   e-133

>gi|152980362|ref|YP_001352109.1| 4-hydroxythreonine-4-phosphate
           dehydrogenase [Janthinobacterium sp. Marseille]
          Length = 343

 Score =  467 bits (1201), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/324 (74%), Positives = 270/324 (83%), Gaps = 1/324 (0%)

Query: 2   NRPILALTCGEPAGIGPEISLRAAWALRHEARCILLGDAALLAQTAYDIDAQMRVAALSL 61
            RP +A+T GEPAGIGPEIS+RAAW LR + + IL+GDAA LA TA  I+  +R++ALSL
Sbjct: 3   KRPTIAITSGEPAGIGPEISIRAAWELRADVKSILIGDAAFLAMTAAAINPAIRLSALSL 62

Query: 62  QAWRNSGLPHFPLDCLTVIDCPVAEPVRPGVLDSRNGRAVLQTLDVAVQGALDGAFAAIV 121
           QA RNSG+P F  D + VIDCP+A  V PG LD++NGR VLQTLD+ ++GA  G F AIV
Sbjct: 63  QAVRNSGVPDFSRDQIAVIDCPLAAHVVPGKLDAQNGRYVLQTLDIGIEGAQQGWFDAIV 122

Query: 122 TAPLQKSTINDAGVAFTGHTEYLAEATRTPQVVMMLAGGDAPY-LRVALATTHLALKDVP 180
           TAPLQKSTINDAGV FTGHTEYLA+ T T QVVMMLA    P  LRV LATTHLALKDV 
Sbjct: 123 TAPLQKSTINDAGVPFTGHTEYLADKTNTAQVVMMLATNATPQPLRVGLATTHLALKDVA 182

Query: 181 AAITADSLARTLDILQADLRGKFGIARPRILVTGLNPHAGENGYLGREEIEVITPALEAA 240
           AAIT DSLA  LDIL ADL+ KFGIA+PRILV GLNPHAGE GYLGREEIEVITP L+AA
Sbjct: 183 AAITIDSLAGILDILLADLQNKFGIAKPRILVAGLNPHAGEGGYLGREEIEVITPVLQAA 242

Query: 241 RARGIDARGPYPADTLFQPKYLEQADCVLAMYHDQGLPVLKFASFGHGINITLGLPIIRT 300
           +A+G D RGPYPADTLFQ KYLE ADCVLAMYHDQGLPVLK+ASFG G+NITLGLP+IRT
Sbjct: 243 QAKGFDVRGPYPADTLFQQKYLEDADCVLAMYHDQGLPVLKYASFGLGVNITLGLPLIRT 302

Query: 301 SVDHGTALDLAAAGLGQADHGSMV 324
           SVDHGTALDLAAAGLGQADHGSM+
Sbjct: 303 SVDHGTALDLAAAGLGQADHGSML 326


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 772,169
Number of extensions: 32419
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 256
Effective length of database: 910,473
Effective search space: 233081088
Effective search space used: 233081088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)