BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0668.p
         (500 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isome...   563   e-161
gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-t...    69   8e-13
gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isome...    57   4e-09

>gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans
           isomerase SurA [Janthinobacterium sp. Marseille]
          Length = 469

 Score =  563 bits (1450), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/433 (66%), Positives = 338/433 (78%), Gaps = 14/433 (3%)

Query: 79  ASTAASTRVEPRPVDSIMVVVNNEVITRQEVAERLASVEKRMAAQNVQLPPRSQLVHQLV 138
             TAA+  V+PR  D+I+VVVNNEVITR +  ER   +E R+ +Q   LPPR QL  QL+
Sbjct: 38  GQTAAA--VQPRLADAIIVVVNNEVITRYDFLERYKMIEARLQSQGGNLPPREQLQRQLL 95

Query: 139 ERMIVERAQAQMAKENGIVVDDAMLDRAMQRIAEQNKLSLPEFRSRLEAEGMNYASFREE 198
           ERMIVERAQ Q AKE GI +DD MLDRAM RIAEQNKLS+PEFR RLE +G+ Y+ FR E
Sbjct: 96  ERMIVERAQLQQAKETGIKIDDTMLDRAMGRIAEQNKLSMPEFRKRLEEDGLVYSKFRNE 155

Query: 199 IRREILSQRLREREVDNKVVVTESEIDNYLAAQANAGGQR-QELDIAQILIRVPENATPE 257
           IR E+  QRLREREVDNKV V++ EID Y+AA         QEL IAQILIRVPENAT +
Sbjct: 156 IRDEMAIQRLREREVDNKVQVSDVEIDAYMAAHNAPAATAPQELHIAQILIRVPENATQK 215

Query: 258 QLAARRERAEDVLRQLKTGADFTKTAAAYSDSSDALTGGDLGWRPVDRLPQLFVDGVAKL 317
           QLA  + RA++V+ QL  GADF K A+AYSD +D LTGG+LGWR  +RLPQLFVD  A L
Sbjct: 216 QLADSKRRADEVVAQLAAGADFAKLASAYSDGTDGLTGGELGWRSAERLPQLFVDATANL 275

Query: 318 QDGQVSGLLKSGNGFHILKLVGRRTAD-----------GSQAAAPAVQQTHVRHILIKVN 366
           QDGQ++ ++KSGNGFHILKL+GRRT              + AA  AV+QTH  HILIKVN
Sbjct: 276 QDGQIAPIVKSGNGFHILKLLGRRTQSVLRADGGASGATAAAAPAAVKQTHASHILIKVN 335

Query: 367 QVVTAAEAKRKLLELKERLDHGSATFEELAKLYSNDLSASKGGDLGWIYPGDTVPEFERA 426
           QVV+AAEA+RKLLELK+RLD+ +ATFEELAKLYSND SA+KGGDLGWIYPGDTVPEFERA
Sbjct: 336 QVVSAAEARRKLLELKQRLDNKAATFEELAKLYSNDFSAAKGGDLGWIYPGDTVPEFERA 395

Query: 427 MDQLKPGEVSQPIETPFGYHLIQVIERKTDDASKERARQAARQAIRDRKIEEATEDWLRQ 486
           MD L  G+VS+PIE+PFGYHLI V ERK+DD S+ER R  ARQAIR++K+EEAT+DWLRQ
Sbjct: 396 MDALPIGQVSEPIESPFGYHLILVTERKSDDVSQERQRMIARQAIREQKVEEATQDWLRQ 455

Query: 487 IRDRAYVEYRNDD 499
           +RDRAYVEYR DD
Sbjct: 456 VRDRAYVEYRMDD 468


>gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl
           cis-trans isomerase [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 12/104 (11%)

Query: 354 QQTHVRHILIKVNQVVTAAEAKRKLLELKERLDHGSATFEELAKLYSNDL-SASKGGDLG 412
           ++ H RHIL++        EAK  + +LK     G A FE+LAK  S D  SA+ GGDL 
Sbjct: 130 KEYHARHILVEKED-----EAKAIIAKLK-----GGAKFEDLAKASSKDPGSAANGGDLD 179

Query: 413 WIYPGDTVPEFERAMDQLKPGEVSQ-PIETPFGYHLIQVIERKT 455
           W  P   V  F  AM  L+ G++S+ P++T FGYH+I++ + +T
Sbjct: 180 WASPASFVKPFSDAMVALQKGQLSETPVKTQFGYHVIKLDDVRT 223


>gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans
           isomerase [Janthinobacterium sp. Marseille]
          Length = 638

 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 4/101 (3%)

Query: 354 QQTHVRHILIKVNQ---VVTAAEAKRKLLELKERLDHGSATFEELAKLYSNDL-SASKGG 409
           +Q    HILI  N+       A AK K  +L E L      F +LAK  SND  SA +GG
Sbjct: 266 EQRRASHILIAANKDAPAAEKAAAKAKAEKLLETLRKSPQDFAKLAKENSNDPGSAERGG 325

Query: 410 DLGWIYPGDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQV 450
           DL +   G  V  FE A  +LK GE+S  +E+ +G+H+I+V
Sbjct: 326 DLDFFSKGMMVKPFEDAAFKLKQGELSDLVESDYGFHIIKV 366


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 931,847
Number of extensions: 34148
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 6
Length of query: 500
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 413
Effective length of database: 899,382
Effective search space: 371444766
Effective search space used: 371444766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)