BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0666.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981139|ref|YP_001352106.1| hypothetical protein mma_0416 [...   524   e-150

>gi|152981139|ref|YP_001352106.1| hypothetical protein mma_0416
           [Janthinobacterium sp. Marseille]
          Length = 345

 Score =  524 bits (1350), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/342 (73%), Positives = 291/342 (85%), Gaps = 1/342 (0%)

Query: 2   SSPGSTPDLRLSELQAWLTTLAATPVLSSTLRPASADASFRRYFRVDTPDGGSAIVMDAP 61
           ++P S  DLRL EL  WL +L A  +   TLRPAS+DASFRRYFR+D  DG + IVMDAP
Sbjct: 5   TTPASADDLRLPELNKWLASLPAPALKLDTLRPASSDASFRRYFRIDGADGATFIVMDAP 64

Query: 62  PPQEDVRPFVKVAGLFGETGVTVPKVLAQDTERGFLLLSDLGSTTYLSQLSADSAHALYM 121
           PPQEDVRPF+ VAG+FGETGV+VP +LAQD E+GFLLLSDLGSTTYL  L+ D+AH LY+
Sbjct: 65  PPQEDVRPFIHVAGVFGETGVSVPAILAQDIEQGFLLLSDLGSTTYLQLLNPDNAHKLYI 124

Query: 122 DAIEALVLLQAQSKPAALPEYDRALLLRELELFREWYIGKHLGVTLTAEQNAVLDKTFDA 181
           DAI+ALV LQ  SKPA LPEYDR LLLREL LF EWY+GKHLG+T+T +Q A L++ F+ 
Sbjct: 125 DAIDALVHLQIHSKPAVLPEYDRTLLLRELMLFPEWYVGKHLGLTMTEKQTAALNQVFEL 184

Query: 182 ILANNLAQPQVYVHRDYHSRNLMVLPKGNPGILDFQDAVYGPITYDLVSLLRDAYIQWDE 241
           +LANNLAQ QVYVHRDYHSRNLMVL +GNPGILDFQDAV+GPITYDL SLLRDAYIQWDE
Sbjct: 185 LLANNLAQAQVYVHRDYHSRNLMVLTQGNPGILDFQDAVFGPITYDLASLLRDAYIQWDE 244

Query: 242 EMVLDWAIRYWEKARRAGLPVTPDIDSFYRDFEWMGLQRHLKVLGIFARLWHRDGKDGYL 301
           E+VLDWAIRYWE+A+RAGLPV PDID+FYRDFE+MGLQRHLK+LGIFARL+HRDGKD YL
Sbjct: 245 EIVLDWAIRYWERAKRAGLPVNPDIDAFYRDFEFMGLQRHLKILGIFARLYHRDGKDAYL 304

Query: 302 KDIPLVMEYTLKTARRYVAFTPLVRLIEKLEQEHAPKFGYTF 343
           KD+PLVMEYT K A RY    PLV+L+++LE + AP+ GYTF
Sbjct: 305 KDLPLVMEYTRKVAYRYKELAPLVKLLDELE-DKAPQVGYTF 345


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 841,815
Number of extensions: 35494
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)