BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0661.p
         (479 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979867|ref|YP_001352067.1| NAD(P) transhydrogenase subunit...   463   e-132

>gi|152979867|ref|YP_001352067.1| NAD(P) transhydrogenase subunit
           beta [Janthinobacterium sp. Marseille]
          Length = 468

 Score =  463 bits (1192), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/481 (54%), Positives = 344/481 (71%), Gaps = 24/481 (4%)

Query: 1   MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGG 60
           MS NL T+ Y+ A+I FI +L GLSHP T+RRGN +G+ GM IAVL T+         G 
Sbjct: 1   MSANLATVSYIGATILFILSLGGLSHPETSRRGNLYGMIGMGIAVLATIF--------GP 52

Query: 61  NPSGDIGYLLVAAGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP 120
             + D GY  +   ++VGG IG Y A+ V+MT+MPELVA MHS +GLAA  +  A+  +P
Sbjct: 53  RVTAD-GYAWIILALLVGGVIGLYAAKKVKMTEMPELVALMHSFVGLAAALVGFASYIDP 111

Query: 121 WALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQ 180
            ++ +    + I   ++VE+++G F+GA+TFSGS+IAFGKL+GK       G P+    +
Sbjct: 112 -SIHLEGAEKAI---HQVEIYVGIFIGAVTFSGSLIAFGKLNGK-----IGGKPLLLPAR 162

Query: 181 HFLNLLLALAMIGFGIIFV----LTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSM 236
           HF+NL+  L +I FG  FV    +     P IIM  IA   GV +++ IGGADMPVVVSM
Sbjct: 163 HFINLIGLLLVIWFGREFVNAPDVASGMTPLIIMTVIALLFGVHMVMAIGGADMPVVVSM 222

Query: 237 LNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGEAA 296
           LNSYSGWAA+  GF L N +LI+ G+LVGSSGAILSYIMC+AMNR+FF+VI GGFGG A 
Sbjct: 223 LNSYSGWAASATGFMLGNDLLIVTGALVGSSGAILSYIMCQAMNRNFFSVIAGGFGGGAP 282

Query: 297 AVGGAAQQQRSVKSG-SADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGV 355
             GGA ++Q    +  SA + A L+  A++V+IVPGYG+AVA+AQH + E+T+ L   G 
Sbjct: 283 KAGGAVKEQVGEATPVSAQETAELLREAKSVVIVPGYGMAVAQAQHTVNEITKLLRAKGT 342

Query: 356 TVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNP-A 414
            V++AIHPVAGRMPGHMNVLLAEA+VPYD V EM++IN +F   DVV+V+GAND+VNP A
Sbjct: 343 KVRFAIHPVAGRMPGHMNVLLAEAKVPYDIVLEMDEINEDFPDTDVVMVIGANDIVNPDA 402

Query: 415 AKDPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDM 474
            +DP SPIAGMP+LE +KA+T IV KRSMA+GYAG+DN LFY +   M+FGDAKK+++++
Sbjct: 403 QEDPDSPIAGMPVLEVWKAETSIVMKRSMASGYAGVDNPLFYKENNRMLFGDAKKMLDEV 462

Query: 475 V 475
           +
Sbjct: 463 L 463


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,003,548
Number of extensions: 40583
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 392
Effective length of database: 899,382
Effective search space: 352557744
Effective search space used: 352557744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)