BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0660.p
         (104 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979857|ref|YP_001352066.1| NAD(P) transhydrogenase subunit...    97   2e-22

>gi|152979857|ref|YP_001352066.1| NAD(P) transhydrogenase subunit
           alpha [Janthinobacterium sp. Marseille]
          Length = 532

 Score = 97.1 bits (240), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 66/93 (70%), Gaps = 7/93 (7%)

Query: 9   NLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIIGAM--LAAGLTEGTVG---- 62
           +L +FVL  ++GY VVW VTPALHTPLM+VTN+IS+II+IGA+  +A  L +G       
Sbjct: 440 HLTVFVLGCFIGYMVVWNVTPALHTPLMSVTNSISSIIVIGALVQVAPPLADGMARPELL 499

Query: 63  -RIAGTLAVALAAVNVFGGFMVTQRMLEMFKKK 94
            +      +AL A+N+FGGF VT+RML+MF+K 
Sbjct: 500 IKCLAAAGIALTAINMFGGFAVTRRMLDMFRKN 532


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 191,956
Number of extensions: 4831
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 34
Effective length of database: 962,231
Effective search space: 32715854
Effective search space used: 32715854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 122 (51.6 bits)