BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0651.p (243 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981614|ref|YP_001352054.1| biopolymer transport protein Ex... 408 e-115 gi|152981708|ref|YP_001351935.1| biopolymer transport protein Ex... 214 3e-57 gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel f... 214 3e-57 gi|152980246|ref|YP_001354154.1| biopolymer transport protein [J... 93 2e-20 gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthin... 75 4e-15 >gi|152981614|ref|YP_001352054.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 242 Score = 408 bits (1048), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/243 (82%), Positives = 218/243 (89%), Gaps = 1/243 (0%) Query: 1 MEVSPYGLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWD 60 MEVSPYGLESLW+QGDFVTKGVAVLL+AMSIASWYVI TKA QL+Q+R+A+ AAGH+FWD Sbjct: 1 MEVSPYGLESLWSQGDFVTKGVAVLLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWD 60 Query: 61 TTSLPDGVATLGQDNPFADVARAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEAS 120 TSL +G ATLG NPFAD+A AGVTAM HH AHKGHLHDQLSVSDW+TLSLRQAIDE S Sbjct: 61 ATSLTEGTATLGNGNPFADIAEAGVTAMRHHEAHKGHLHDQLSVSDWITLSLRQAIDETS 120 Query: 121 GKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTAL 180 KLQ+GMAVLASVGSTAPFVGLFGTVWGIYHALV+IGT+GQASIDKVAGPVGEALIMTAL Sbjct: 121 AKLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTAL 180 Query: 181 GLAVAIPATFGYNALVRGNKTTIAKLNKFGFDLHALFVTGARAAGEDGQPNGGKAKLTAV 240 GLAVAIPATFGYNALVRGNK+ IAK+NKFGFDLHALFVTG+R A + P AKL AV Sbjct: 181 GLAVAIPATFGYNALVRGNKSVIAKMNKFGFDLHALFVTGSR-ANDTNTPGASGAKLVAV 239 Query: 241 GRA 243 G A Sbjct: 240 GGA 242 >gi|152981708|ref|YP_001351935.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 279 Score = 214 bits (546), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/220 (49%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 2 EVSPYGLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWDT 61 E +PYG+ +LW DFV KG ++LL SI SWY+I+ K + K + FWD Sbjct: 59 EANPYGISALWNGSDFVAKGTLLILLLFSIGSWYIIVAKLLAQRKLHKQARDTERTFWDA 118 Query: 62 TSLPDGVATLGQDNPFADVARAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEASG 121 ++ G+ TL PF + + A HH+ H+ + WV SL ++D Sbjct: 119 GTVRQGLDTLESGTPFHFIGTLALKATEHHSGLLAHV----DFNTWVVQSLHSSVDTVKN 174 Query: 122 KLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALG 181 +LQ G+A LA+VGSTAPFVGLFGTVWGIYHAL +IG +GQASIDKVAGPVGEALIMTA+G Sbjct: 175 RLQDGLAFLATVGSTAPFVGLFGTVWGIYHALTAIGLSGQASIDKVAGPVGEALIMTAIG 234 Query: 182 LAVAIPATFGYNALVRGNKTTIAKLNKFGFDLHALFVTGA 221 LAVA+PA GYN LVR NK + K+ F LHA+ ++ A Sbjct: 235 LAVAVPAVLGYNLLVRRNKAALEKVQDFSSTLHAVLLSSA 274 >gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel family protein [Janthinobacterium sp. Marseille] Length = 230 Score = 214 bits (545), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/219 (52%), Positives = 148/219 (67%), Gaps = 5/219 (2%) Query: 7 GLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWDTTSLPD 66 GL WAQGD V+ VA +LL MSI SWY I++KA+ + RK SAAA FW +L D Sbjct: 11 GLAHYWAQGDAVSHSVAYVLLIMSILSWYYILSKAWSSWRIRK-SAAALDGFWQAPTLTD 69 Query: 67 GVATLGQ---DNPFADVARAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEASGKL 123 +AT+ + +N + +A V A ++ H L+ + +T +LRQ I+ S +L Sbjct: 70 AIATIRRSDSENVYTPLAAQSVEA-ANIKPHANSLNANTDPGELITRTLRQEINRVSSRL 128 Query: 124 QTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLA 183 +TG+ +LASVGSTAPF+GLFGTVWGIYHALV++ ++G IDKVAGPVGEALIMTALGLA Sbjct: 129 ETGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSSSGTIQIDKVAGPVGEALIMTALGLA 188 Query: 184 VAIPATFGYNALVRGNKTTIAKLNKFGFDLHALFVTGAR 222 VAIPA YNA R N+ T+A+L+ F DLHA TGAR Sbjct: 189 VAIPAVLAYNAFTRVNRVTLAELDAFAHDLHAYLTTGAR 227 >gi|152980246|ref|YP_001354154.1| biopolymer transport protein [Janthinobacterium sp. Marseille] Length = 230 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 85/180 (47%), Gaps = 9/180 (5%) Query: 22 VAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFW-----DTTSLPDGVATLGQDNP 76 V LLL +S+ SW I K F + R + FW +T L + Sbjct: 23 VMALLLGVSVMSWTYIFRKMFAIKNARAQTEEFERAFWSGGDLNTLYLEASSNRRKNNGS 82 Query: 77 FADVARAGVTAMSHHTAHKGHLHDQLSVS---DWVTLSLRQAIDEASGKLQTGMAVLASV 133 + R MS KG +D VS D ++R A L++ +A LASV Sbjct: 83 TGALERIFEAGMSEFNKAKGS-NDSFHVSARLDGARRAMRAAYQREMDALESHLAFLASV 141 Query: 134 GSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLAVAIPATFGYN 193 GS +P+VGLFGTVWGI +A + QA++ VA + EALI TA+GL AIPA YN Sbjct: 142 GSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAEALIATAIGLFAAIPAVVAYN 201 >gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthinobacterium sp. Marseille] Length = 591 Score = 75.1 bits (183), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 31/233 (13%) Query: 22 VAVLLLAMSIASWYVIITK-----------AFQLLQFRKASAAAGHQFWDTTSLPDGVAT 70 V +LL M + SW ++I+K A + FR+ + A Q +++ LP V Sbjct: 370 VVILLGVMMVLSWAIMISKGRNYGAISRANAIFMDHFRETAGAPLDQLANSSKLPQDVKA 429 Query: 71 LGQDNPFADVARAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAID----EASGKLQTG 126 D+ + + V M +G+ D +VS+ ++R A+D + ++ Sbjct: 430 ---DSSLWRLYKVAVDEMRRRH-DRGY--DLNAVSNATISAIRAAMDGVMVRENERMSHR 483 Query: 127 MAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLAVAI 186 M L++ AP+VGLFGTV GI V G I+ VA + AL+ TA GL VAI Sbjct: 484 MNWLSTAIEGAPYVGLFGTVIGIMLVFVVAAMAGAVDINSVAPGMAAALLCTAAGLGVAI 543 Query: 187 PATFGYNALVRGNKTTIAKLNKFGFDLHALFVT--GARAAGEDGQPNGGKAKL 237 PA FGYN L ++ + G D+ A+FV R A E G+ +A L Sbjct: 544 PALFGYNWLA-------SRSDAIGADM-AVFVDEFATRLAEEQGEGRQARANL 588 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 597,943 Number of extensions: 24420 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 5 Length of query: 243 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 162 Effective length of database: 921,564 Effective search space: 149293368 Effective search space used: 149293368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)