BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0650.p (138 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980542|ref|YP_001352053.1| biopolymer transport protein Ex... 211 9e-57 gi|152981671|ref|YP_001354584.1| biopolymer transport protein Ex... 151 2e-38 gi|152981777|ref|YP_001351936.1| biopolymer transport protein Ex... 132 6e-33 gi|152981856|ref|YP_001351937.1| biopolymer transport protein Ex... 119 9e-29 gi|152980805|ref|YP_001354155.1| biopolymer transport protein To... 59 1e-10 >gi|152980542|ref|YP_001352053.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 136 Score = 211 bits (538), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 103/137 (75%), Positives = 121/137 (88%), Gaps = 1/137 (0%) Query: 1 MAMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 60 MAMGSLSD +DDFNPEINTTPLVDVMLVLLIIFI+TIPVMNHAVK+DLP A++QP+ VKP Sbjct: 1 MAMGSLSD-EDDFNPEINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPHAANQPNDVKP 59 Query: 61 ESINLSIDAAGNVFWNEEKIDSSELNARIAAAAQKQPQPELHLRAERTTQYEKVAQVMSA 120 E+IN+SIDAAG V+WN E +D S++ +RIA AA+ PQPELHLRA+R T YEKVAQVM+A Sbjct: 60 ETINVSIDAAGQVYWNNEVLDQSQMLSRIADAAKVTPQPELHLRADRLTPYEKVAQVMAA 119 Query: 121 AQSGGLAKIGFVTDPEK 137 AQSGGL K+GFVT+ K Sbjct: 120 AQSGGLTKMGFVTEAPK 136 >gi|152981671|ref|YP_001354584.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 142 Score = 151 bits (381), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 71/136 (52%), Positives = 99/136 (72%), Gaps = 3/136 (2%) Query: 1 MAMGSLSDSDDDFNP--EINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQV 58 MA G +D P +IN TP+VDVMLVLL+IFIIT P+ HA+K+DLP A S P Sbjct: 1 MAFGGFNDKQQA-GPMADINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSAQSAPAPT 59 Query: 59 KPESINLSIDAAGNVFWNEEKIDSSELNARIAAAAQKQPQPELHLRAERTTQYEKVAQVM 118 +P +I+LSI+ AG VFWN + + +LN R+A AA++QPQP++ LRA++ T+YE +AQVM Sbjct: 60 EPTTISLSINGAGAVFWNNDAVTLDDLNTRLATAAKQQPQPQVQLRADKGTRYEVIAQVM 119 Query: 119 SAAQSGGLAKIGFVTD 134 ++AQ G+ K+GFVT+ Sbjct: 120 ASAQGNGITKLGFVTE 135 >gi|152981777|ref|YP_001351936.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 142 Score = 132 bits (333), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 1/127 (0%) Query: 10 DDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKPESINLSIDA 69 +D EINTTPLVDVMLVLLIIF+ITIPV+ + + ++LP + + KPE+INLS+D Sbjct: 11 EDSVVSEINTTPLVDVMLVLLIIFLITIPVVTNTIAVNLPHEENHVRETKPENINLSVDK 70 Query: 70 AGNVFWNEEKIDSSE-LNARIAAAAQKQPQPELHLRAERTTQYEKVAQVMSAAQSGGLAK 128 G ++W++E I +E L R+ A +QPQPE+ +R + +YE + +V+ A Q G+ K Sbjct: 71 NGKIYWDQESIAGAEALTTRLKTVAVQQPQPEIQIRGDGDAKYEAIGRVIFACQRAGIVK 130 Query: 129 IGFVTDP 135 IGF+T+P Sbjct: 131 IGFITEP 137 >gi|152981856|ref|YP_001351937.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 143 Score = 119 bits (297), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 93/136 (68%), Gaps = 2/136 (1%) Query: 1 MAMGSLSDSDD-DFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVK 59 M++GS + S + + E+NTTPL+DVMLVLLI+ IITIP+ H V+++LP + P V Sbjct: 3 MSVGSGNGSGEPEVMSEMNTTPLIDVMLVLLIMLIITIPIQLHNVELNLPAGNPPPQTVI 62 Query: 60 PESINLSIDAAGNVFWNEEKIDSSE-LNARIAAAAQKQPQPELHLRAERTTQYEKVAQVM 118 PE + + I+AAG V WN E I+ E L+++++ AA + QPELHLRA+R Y+ VA V+ Sbjct: 63 PEVVQVDINAAGVVSWNGEAINDREVLDSKLSGAAAQDVQPELHLRADRNAPYKAVAAVL 122 Query: 119 SAAQSGGLAKIGFVTD 134 ++AQ G K+G V + Sbjct: 123 ASAQRLGANKLGLVGN 138 >gi|152980805|ref|YP_001354155.1| biopolymer transport protein TolR [Janthinobacterium sp. Marseille] Length = 146 Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 11/131 (8%) Query: 13 FNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQ---PDQ-----VKPE-SI 63 F EIN P +DVMLVLL+IF++ P+ N V I+LP A+ P + ++P+ S Sbjct: 16 FKSEINVVPYIDVMLVLLVIFMVAAPLTNPGV-INLPNAAKSTLPPTEYIRIDLRPDTSA 74 Query: 64 NLSIDAA-GNVFWNEEKIDSSELNARIAAAAQKQPQPELHLRAERTTQYEKVAQVMSAAQ 122 L+I + G E + + L ++ A +P+ + + A++ +Y++V Q +S A+ Sbjct: 75 TLTIAGSKGGKAPTETAANRAALAQKLQAIHADRPELPVMISADKNIKYDEVIQAISEAK 134 Query: 123 SGGLAKIGFVT 133 G+ ++G T Sbjct: 135 KLGIERVGLAT 145 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 302,548 Number of extensions: 10395 Number of successful extensions: 35 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 7 Length of query: 138 Length of database: 1,221,021 Length adjustment: 74 Effective length of query: 64 Effective length of database: 947,443 Effective search space: 60636352 Effective search space used: 60636352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 125 (52.8 bits)