BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0647.p
         (455 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979778|ref|YP_001352049.1| adenylosuccinate lyase [Janthin...   849   0.0  
gi|152980604|ref|YP_001354303.1| fumarate hydratase [Janthinobac...    59   9e-10

>gi|152979778|ref|YP_001352049.1| adenylosuccinate lyase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/455 (88%), Positives = 432/455 (94%)

Query: 1   MSLSALSALSPLDGRYASKTDKLRPLLSEAGFMHHRVKVEIAWLQALSEAGFAEIKPFSA 60
           M LS LSALSPLDGRYASKTDKLRP+LSE+GFMHHRVKVEIAWLQALS AGFAEIKPFSA
Sbjct: 1   MPLSTLSALSPLDGRYASKTDKLRPILSESGFMHHRVKVEIAWLQALSAAGFAEIKPFSA 60

Query: 61  SARALLEQLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC 120
           SA ALL++L  DFTEADA RIK+IEAVTNHDVKAVEYWLKE+VKDVPELVAA+EFIHFAC
Sbjct: 61  SANALLDKLTTDFTEADAQRIKDIEAVTNHDVKAVEYWLKEQVKDVPELVAATEFIHFAC 120

Query: 121 TSEDINNTSHGMMLKAARDTVLLPSLQAVIAKLTELAHEHAAVPMLSRTHGQPASPTTLG 180
           TSEDINNTSHGMMLKAARDTVL+P+LQ +I+KLT+LAH++AAVPM+SRTHGQPASPTTLG
Sbjct: 121 TSEDINNTSHGMMLKAARDTVLVPALQGLISKLTQLAHDNAAVPMMSRTHGQPASPTTLG 180

Query: 181 KEVANVVARLQRAAKRIAAVEILGKMNGAVGNYNAHLSAYPQTDWAAFSKQVVEQRLGLV 240
           KE+ANVVARL+RA  RI AVEILGKMNGAVGN+NAHLSAYP TDW AFSK+V+E+RLGL 
Sbjct: 181 KEMANVVARLKRAVDRIGAVEILGKMNGAVGNFNAHLSAYPNTDWQAFSKEVIEKRLGLT 240

Query: 241 FNPYTIQIEPHDYMAELFDAVARTNTILLDLNRDIWGYISLGYFKQRTKAGEIGSSTMPH 300
           FNPYTIQIEPHDYMAELFDA+ARTNTILLDLNRDIWGYISLGYFKQ TKAGEIGSSTMPH
Sbjct: 241 FNPYTIQIEPHDYMAELFDAIARTNTILLDLNRDIWGYISLGYFKQSTKAGEIGSSTMPH 300

Query: 301 KVNPIDFENSEGNLGMANAVLKHLSEKLPVSRWQRDLTDSTVLRNIGVGFGYTLLAYDSC 360
           KVNPIDFENSEGNLGMANAVLKH++EKLPVSRWQRDLTDSTVLRNIGVGFGY LLAYDSC
Sbjct: 301 KVNPIDFENSEGNLGMANAVLKHMAEKLPVSRWQRDLTDSTVLRNIGVGFGYALLAYDSC 360

Query: 361 LRGLNKLEVNPQRLADDLDATWEVLAEPVQTVMRRYGIENPYEQLKELTRGKGISKDALR 420
           LRGLNKLEVNP R+A DLD TWEVLAEPVQTVMRRYGIENPYEQLK+LTRGKGISK+AL+
Sbjct: 361 LRGLNKLEVNPVRIAQDLDETWEVLAEPVQTVMRRYGIENPYEQLKDLTRGKGISKEALQ 420

Query: 421 DFINGLAIPQEAKDHLLAMTPANYIGTAVELAKQI 455
           +FI  LAIPQEAKDHLLAMTPANYIG A +LAK+I
Sbjct: 421 EFIATLAIPQEAKDHLLAMTPANYIGYATKLAKEI 455


>gi|152980604|ref|YP_001354303.1| fumarate hydratase
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 31/218 (14%)

Query: 109 LVAASEFIHFACTSEDINNTSHGMMLKAARDTVLLPSLQAVIAKLTELAHEHAAVPMLSR 168
           LV  ++ ++   +S DI  T+  +    A    LLP+  A+ A L   A E A +  + R
Sbjct: 126 LVHPNDDVNLGQSSNDIFPTAMYVAASVAVSKTLLPAATALQATLNGKAEEFADIVKIGR 185

Query: 169 THGQPASPTTLGKEVANVVARLQRAAKRIAA----VEILGKMNGAVGNYNAHLSAYPQTD 224
           TH Q A+P TLG+E +  VA+L ++   I A    ++ L     AVG     L+ +P+  
Sbjct: 186 THLQDATPLTLGQEFSGYVAQLAQSTAAIHALLPPLQDLAVGGTAVGT---GLNTHPE-- 240

Query: 225 WAAFSKQV---VEQRLGLVF----NPYTIQIEPHDYMAELFDAVARTNTILLDLNRDIWG 277
              F  +V   + QR G+ F    N +   +  HD M  +   +      ++ +  D+  
Sbjct: 241 ---FGVRVAAELTQRTGVTFKSADNKFA-ALAAHDAMVSVHGGLKTLAASMMKIANDVR- 295

Query: 278 YISLGYFKQRTKAGEI-------GSSTMPHKVNPIDFE 308
           +++ G    R+  GEI       GSS MP KVNP   E
Sbjct: 296 WLASG---PRSGLGEISIPENEPGSSIMPGKVNPTQSE 330


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,015,020
Number of extensions: 40462
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 369
Effective length of database: 903,079
Effective search space: 333236151
Effective search space used: 333236151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)