BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0646.p
         (174 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980646|ref|YP_001352048.1| cytochrome B561 [Janthinobacter...   241   2e-65
gi|152983054|ref|YP_001352642.1| cytochrome B561 [Janthinobacter...    57   5e-10

>gi|152980646|ref|YP_001352048.1| cytochrome B561 [Janthinobacterium
           sp. Marseille]
          Length = 174

 Score =  241 bits (615), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 140/174 (80%)

Query: 1   MERYTKPAVLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACVR 60
           M RYT  A+ LHWL+A+LII+AF LGLTMVDIPGLTPTKLKYFSWHKWLGVTV  LAC+R
Sbjct: 1   MRRYTLTAIALHWLMAILIIAAFLLGLTMVDIPGLTPTKLKYFSWHKWLGVTVFGLACLR 60

Query: 61  LLWRLTHKAPAYPANMPGWQQAAAHSLHLGLYALMFAIPVSGYFYSLSAGVPVVYLGVLP 120
           LLW L+H APA+P +M  WQ+ AA   H  +Y L+FA+P+SGYFYSL+AGVPVVYLG++P
Sbjct: 61  LLWALSHPAPAHPPSMADWQKKAARVSHGLMYVLIFAVPLSGYFYSLAAGVPVVYLGIVP 120

Query: 121 LPVLMAPDPALKPLLKEIHYWLNMTLLAAFALHVLAALKHQFIDRDNIFKRMLP 174
           LPV + PD  LK LLK++HY  N+TLL  F LH+LA +KHQ IDRD   +RMLP
Sbjct: 121 LPVFIGPDQELKALLKQVHYACNVTLLIVFFLHILAVIKHQLIDRDRTLQRMLP 174


>gi|152983054|ref|YP_001352642.1| cytochrome B561 [Janthinobacterium
           sp. Marseille]
          Length = 180

 Score = 57.4 bits (137), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 11  LHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSW-HKWLGVTVLALACVRLLWRLTHKA 69
            HWL A+L++ A+ L  +  D   L   +       H+ LGV V  +  +RLLW L    
Sbjct: 18  FHWLTAVLVLVAYVLSKS--DRYSLYSAEADGIRRIHETLGVLVFIVVVLRLLWGLIDNM 75

Query: 70  PAYPANMPGWQQAAAHSLHLGLYALMFAIPVSGYFYSLSAGVPV--VYLGVLPLPVLMAP 127
           P      P W   AA  +   LY L+ +IP +    +   G+P+  +   + P P++ A 
Sbjct: 76  PVRRIR-PRWMAMAATFVRFALYVLLISIPTTAVIGTWLEGIPITLIEFDIAP-PIVEAR 133

Query: 128 DPALKPLLKEIHYWLNMTLLAAFALHVLAALKHQFIDRDNIFKRMLP 174
           +  +  L+  IH  L   +L     H  AAL H F  RD +FK M+P
Sbjct: 134 E--MGQLIMRIHNILGTAILWIAGAHAAAALFHHFYLRDEVFKSMIP 178


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 380,856
Number of extensions: 13403
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 97
Effective length of database: 936,352
Effective search space: 90826144
Effective search space used: 90826144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)