BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0645.p
         (187 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980568|ref|YP_001352047.1| hypothetical protein mma_0357 [...   241   2e-65

>gi|152980568|ref|YP_001352047.1| hypothetical protein mma_0357
           [Janthinobacterium sp. Marseille]
          Length = 191

 Score =  241 bits (615), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/157 (73%), Positives = 129/157 (82%)

Query: 29  KVDAAKSTVVATFKQLNVPVDAKFNKISAAIDFDAAKPEQGKATVDIDVASFDLGDAEYN 88
           K D  KS V   FKQLNVPV+A F K +A I +DAAKPE  KA VDIDV  FDLGD EYN
Sbjct: 32  KTDTTKSKVTIVFKQLNVPVEATFKKFNAQITYDAAKPETSKANVDIDVNGFDLGDPEYN 91

Query: 89  KEVQKKEWFNAAQFPKASFVTSSIKAAGAGKFTVAGKLTIKGKSSDVSFPLTLKKEGAAQ 148
           +EV KKEWFNAAQFPKA+FV+S IK   AGK  V GKLTIKGK++DVSFPLT+KKEG+ Q
Sbjct: 92  REVLKKEWFNAAQFPKATFVSSQIKPGAAGKLDVTGKLTIKGKTTDVSFPLTVKKEGSNQ 151

Query: 149 IFDGVLPIKRLTYNIGEGEWKDTSMVADEVTIKFHIV 185
           +F+GVLPIKRLTYNIGEGEWKDTSMVADEVTIKF +V
Sbjct: 152 VFEGVLPIKRLTYNIGEGEWKDTSMVADEVTIKFRVV 188


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 345,418
Number of extensions: 12791
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 109
Effective length of database: 932,655
Effective search space: 101659395
Effective search space used: 101659395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)