BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0643.p
         (211 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980212|ref|YP_001354526.1| pyridoxamine 5'-phosphate oxida...   303   4e-84

>gi|152980212|ref|YP_001354526.1| pyridoxamine 5'-phosphate oxidase
           [Janthinobacterium sp. Marseille]
          Length = 211

 Score =  303 bits (777), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 138/211 (65%), Positives = 171/211 (81%)

Query: 1   MSLADLRKDYSRASLSELDTAADPIDQFAIWFDEASRAQIPEPNAMSVATVGADGRPSSR 60
           MS+AD+R DY++A LSELDT  DP+ QFA WF EA RA++PEPNAMSV+TV A+GRPSSR
Sbjct: 1   MSIADIRTDYTQAKLSELDTDPDPVAQFAKWFGEALRAEVPEPNAMSVSTVAANGRPSSR 60

Query: 61  IILIKQFDQQGFTWFTNYDSRKGLDVIHNPYVALLFHWVELERQVRVEGKIERVSKEESD 120
           I+LIK FDQ+GFTWFTNY+SRKG ++  NP+ ALLFHW+ LER+VR+EG++ERVS  ES+
Sbjct: 61  ILLIKDFDQRGFTWFTNYESRKGQELAQNPHAALLFHWIPLEREVRIEGRVERVSSAESE 120

Query: 121 AYFYSRPLASQLGAIASQQSRTVASRETLEQQYETTKQQFGEHPTRPEHWGGYRVIPDRI 180
            YF SRP+ S+L A+AS QS  VA R  LE QY   + Q+GEHP RPEHWGGYR+ PD I
Sbjct: 121 QYFQSRPVKSRLSALASSQSHPVADRTALEAQYAKVEAQYGEHPPRPEHWGGYRLKPDYI 180

Query: 181 EFWQGRPSRMHDRVLYTRSPDGQWQRQRLQP 211
           EFWQGR SR+HDR++Y+   +G+WQR RLQP
Sbjct: 181 EFWQGRASRLHDRIVYSLDKEGKWQRHRLQP 211


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 490,775
Number of extensions: 18991
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 132
Effective length of database: 928,958
Effective search space: 122622456
Effective search space used: 122622456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)