BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0641.p
         (177 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981214|ref|YP_001354529.1| peptide methionine sulfoxide re...   283   5e-78
gi|152983052|ref|YP_001352637.1| methionine sulfoxide reductase ...   125   2e-30

>gi|152981214|ref|YP_001354529.1| peptide methionine sulfoxide
           reductase [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  283 bits (723), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 149/173 (86%)

Query: 1   MATQIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVDPSYEQVCGGQTGHAEVVKLV 60
           MA +IA LGGGCFWC EAV+QQ+KG+++VESGYTGG V +P YEQ+C G TGHAEVV+L 
Sbjct: 1   MAMEIATLGGGCFWCTEAVFQQLKGIKAVESGYTGGHVENPVYEQICEGTTGHAEVVRLT 60

Query: 61  FDPQQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDQTQHDTARHIIAEMALV 120
           +DP+ +SFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYY    Q DTA+H+I+EMA V
Sbjct: 61  YDPEIVSFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYHSPEQQDTAKHVISEMANV 120

Query: 121 WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEK 173
           WDAPIVTELSP + YY+AE YHQNYF  +P QGYCAF+VAPKV+K R+ F++K
Sbjct: 121 WDAPIVTELSPAETYYKAESYHQNYFRMNPMQGYCAFIVAPKVSKFRKTFSDK 173


>gi|152983052|ref|YP_001352637.1| methionine sulfoxide reductase A
           [Janthinobacterium sp. Marseille]
          Length = 168

 Score =  125 bits (313), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 94/157 (59%), Gaps = 8/157 (5%)

Query: 4   QIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVDPSYEQVCGGQTGHAEVVKLVFDP 63
           Q AVL GGCFW ++ + +++ GV S   GYTGG+  + +Y         HAE + +VFD 
Sbjct: 3   QRAVLAGGCFWGMQDLIRKLPGVVSTRVGYTGGNTPNATYRN----HGTHAEGIDIVFDT 58

Query: 64  QQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDQTQHDTARHIIAEM--ALVW 121
              S++ ILE FF IHDPTT +RQGNDVGT YRS I+Y    Q   A   IA++  + +W
Sbjct: 59  TLTSYQIILEYFFQIHDPTTWDRQGNDVGTSYRSAIFYTTDEQRKIAEKTIADVNASGLW 118

Query: 122 DAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGY-CAF 157
              +VTE+ P   ++ AE  HQ+Y  + P +GY C F
Sbjct: 119 PGKVVTEVEPVGDFWDAEPEHQDYLKKLP-EGYTCHF 154


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 419,542
Number of extensions: 15696
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 100
Effective length of database: 936,352
Effective search space: 93635200
Effective search space used: 93635200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)