BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0639.p
         (243 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983019|ref|YP_001351718.1| outer membrane protein W [Janth...   297   5e-82
gi|152981449|ref|YP_001352915.1| outer membrane protein W [Janth...    64   7e-12

>gi|152983019|ref|YP_001351718.1| outer membrane protein W
           [Janthinobacterium sp. Marseille]
          Length = 242

 Score =  297 bits (760), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 185/247 (74%), Gaps = 9/247 (3%)

Query: 1   MQKQFSFLPKLAALSVMAAFAAPAMAQSAGSNVVNVGWFHLAPQDSSDPLQT----PAGP 56
           M K FS L KLAA+SV+AA + PA AQSAG N+VN+GWFHL P +SS+PL      P GP
Sbjct: 1   MTKPFSVLSKLAAVSVLAAISLPAAAQSAGDNIVNIGWFHLRPNESSEPLYRHMPAPVGP 60

Query: 57  LPGSGASVGTADTLGLAFTHFFTDNFALTTDLGIPPTFHLNGTGSLSGVGEIGKAKQWSP 116
           L GS A++  ADTLGLA THFFTDNFALT DLG+PP F L G G+LS +G++G+AKQWSP
Sbjct: 61  LAGSSATISNADTLGLALTHFFTDNFALTADLGLPPKFKLYGGGTLSQLGQLGEAKQWSP 120

Query: 117 AVVAKWFFGDANSQFRPFVGAGVSYVWYDSIQLSNTFQQAISMRYTGNRSAASPSTAALS 176
           A++AKW+FGD NS+ RPFVG GV+ VWY S++LS++ Q+ ++    G       +TA LS
Sbjct: 121 AIIAKWYFGDRNSKLRPFVGLGVTRVWYTSVELSSSLQRQVTGGLPGGT-----ATADLS 175

Query: 177 SSWAPVVSLGANYNFDKNWSLGFSVSYIPLKTDADITTTLPTGTQVHSTTSLKINPIVTF 236
           SSWAPV ++G  YNF + WSLGFSV+YIPLKTDADIT  +       +TT+L ++P+VTF
Sbjct: 176 SSWAPVANVGLTYNFTEKWSLGFSVAYIPLKTDADITGRIGNTVISRNTTTLTLDPLVTF 235

Query: 237 LSVGYKF 243
           LSVGYKF
Sbjct: 236 LSVGYKF 242


>gi|152981449|ref|YP_001352915.1| outer membrane protein W
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score = 64.3 bits (155), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 53/241 (21%)

Query: 13  ALSVMAAFAAPAMAQS--AGSNVVNVGWFHLAPQDSSDPLQTPAGPLPGSGASVGTADTL 70
           AL  +AA ++ A AQ    GS +V V   +L P + SDP+             VG +D L
Sbjct: 9   ALCSLAALSSQAFAQQTQEGSWLVRVRAVNLDPANKSDPI-----------GGVGASDRL 57

Query: 71  --------GLAFTHFFTDNFALTTDLGIPPTFHLNGTGSLSGVGEIGKAKQWSPAVVAKW 122
                    L  ++FFT N+A    L  P    ++  G+     +IG  K   P +  ++
Sbjct: 58  TINSKVIPELDISYFFTPNWATELVLTYPQKQKVSLDGT-----QIGTFKHLPPTLTLQY 112

Query: 123 FFGDANSQFRPFVGAGVSYVWYDSIQLSNTFQQAISMRYTGNRSAASPSTAALSSSWAPV 182
            F    +   P+VGAG++Y    S+ L N               AA+       SS    
Sbjct: 113 HFTPEKT-ISPYVGAGINYTRISSVDLLN--------------GAATLE----KSSVGLA 153

Query: 183 VSLGANYNFDKNWSLGFSVSYIPLKTDADITTTLPTGTQVHSTTSLKINPIVTFLSVGYK 242
           +  G ++  DKNWS+   V  + +++D +        T     +++K++P +  + VGY+
Sbjct: 154 LQAGVDFKIDKNWSINLDVKKVQIRSDVN--------TAAGQLSAVKVDPWLVGVGVGYR 205

Query: 243 F 243
           F
Sbjct: 206 F 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 545,648
Number of extensions: 23191
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 162
Effective length of database: 921,564
Effective search space: 149293368
Effective search space used: 149293368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)