BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0638.p
         (351 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981358|ref|YP_001354532.1| hypothetical protein mma_2842 [...   430   e-122
gi|152981334|ref|YP_001352969.1| translation factor (SUA5) [Jant...    57   1e-09

>gi|152981358|ref|YP_001354532.1| hypothetical protein mma_2842
           [Janthinobacterium sp. Marseille]
          Length = 340

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/338 (67%), Positives = 262/338 (77%), Gaps = 5/338 (1%)

Query: 12  IDAAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSP 71
           +D  AI  AAR+LEQG LVAFPTETVYGLG DAENPAA+A IYAAKGRP+NHPVIVH++P
Sbjct: 6   LDWPAIRDAARRLEQGELVAFPTETVYGLGADAENPAAVANIYAAKGRPSNHPVIVHLAP 65

Query: 72  EADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGLRCPSHPVAQA 131
           EAD+ YWA SV  +A++LIA FWPGPLTLILKRA HIPDAV+GGQDS+GLRCPSHPVAQA
Sbjct: 66  EADLNYWAQSVSPDAQKLIAVFWPGPLTLILKRAVHIPDAVSGGQDSIGLRCPSHPVAQA 125

Query: 132 LLREFRGGKGGIAAPSANKFGHVSPTTAAHVREEFGSDENSPLDDVLDGGQSEVGIESTI 191
           LLR F+ GKGG+AAPSANKFGHVSPTTA HV  EFG D  S L  +LDGGQSEVGIESTI
Sbjct: 126 LLRAFKDGKGGVAAPSANKFGHVSPTTAQHVHNEFGGDAGSLLTCILDGGQSEVGIESTI 185

Query: 192 VDLSRIDSHGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAHYAPHTPVVQVS 251
           VD+SR   H  VLLRPG ISA++IAAV+G   A+PD  APRASGTL++HYAP TPVV V 
Sbjct: 186 VDMSR--GHA-VLLRPGHISAEQIAAVIGYLPASPDQAAPRASGTLESHYAPLTPVVLVD 242

Query: 252 LEELPTVLPKLAEIGQKVALIRRQFQGSVPACVEVTRAMPVSADAYAHDLYAALREMDHA 311
            E L  VL KL   G++ AL+  Q+       V  + ++P +  AYAHDLYAALR MD  
Sbjct: 243 GEHLLAVLQKLNLRGRRAALM--QYAVDAMPLVAASISLPDTPIAYAHDLYAALRAMDDV 300

Query: 312 AADLIVVESLPASADWQGVNDRLRRAAFDSQGLLARLF 349
            AD+IVV++ P    W GVNDRLRRAA DS G+L RL 
Sbjct: 301 HADVIVVQTPPTDVAWSGVNDRLRRAAHDSAGILQRLL 338


>gi|152981334|ref|YP_001352969.1| translation factor (SUA5)
           [Janthinobacterium sp. Marseille]
          Length = 207

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 12/197 (6%)

Query: 14  AAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEA 73
           A  I  A + +  GG+VA PT++ Y L    ++  A+A +   +     H + +     +
Sbjct: 14  ARLISQAVQIVRDGGIVALPTDSCYALVCHLDDKDAVARLRRIRNVDDKHHLTLLCRDLS 73

Query: 74  DIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAG-GQDSVGLRCPSHPVAQAL 132
           +I  + A V  +  R++ +  PG  T IL+    +P  ++   + ++GLR P + +  AL
Sbjct: 74  EIALY-AKVDNQQYRMLKAATPGAYTFILEATKEVPRRLSHPSRKTIGLRVPENRIVHAL 132

Query: 133 LREFRGGKGGIAAPSANKFGHVSPTTAAHVREEFGSDENSPLDDVLDGGQSEVGIESTIV 192
           L E      G         G   P T     E+     N  +D V+DGG       +T++
Sbjct: 133 LEELAQPLLGTTLILP---GEDEPLTDP---EDVRDRLNKVVDLVIDGGACSFE-PTTVI 185

Query: 193 DLSRIDSHGPVLLRPGQ 209
           DL+   S  PVL R G+
Sbjct: 186 DLT---SGEPVLQRQGR 199


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 879,640
Number of extensions: 38222
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 267
Effective length of database: 910,473
Effective search space: 243096291
Effective search space used: 243096291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)