BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0637.p
         (401 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980098|ref|YP_001354533.1| phosphoribosylaminoimidazole ca...   537   e-154
gi|152980979|ref|YP_001353684.1| phosphoribosylglycinamide formy...    83   4e-17

>gi|152980098|ref|YP_001354533.1| phosphoribosylaminoimidazole
           carboxylase ATPase subunit [Janthinobacterium sp.
           Marseille]
          Length = 361

 Score =  537 bits (1383), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/360 (72%), Positives = 288/360 (80%)

Query: 41  MGFKVAVLEADADCPAGQVADRLINAAYDDGAALAELGALCAAVTTEFENVSAKSLATLA 100
           MGFKVAVLE   DCPA   AD L  A Y D  AL +L   C AVTTEFENVSAKSLA LA
Sbjct: 1   MGFKVAVLEPALDCPASHAADYLHCADYTDSDALTKLAGQCVAVTTEFENVSAKSLAFLA 60

Query: 101 LQTFVAPAASGVSIAQDRTAEKAFFTECGSQSGVLPAPHLVINSEADIDGLDANLLPGIL 160
            +TFVAP+A  VSIAQDR AEK FF EC + SGV PA H  INS AD+D +  +LLPGIL
Sbjct: 61  ERTFVAPSADCVSIAQDRMAEKRFFIECATTSGVFPASHKEINSTADVDAVPDDLLPGIL 120

Query: 161 KTARMGYDGKGQVRVRSVEEVRNAFAAMKGVTCVLEKMLPLAYEVSVLVARGHDGQAVVY 220
           KT RMGYDGKGQVRV++ EE+ NA+A M GV CVLEKMLPLAYE+SVL ARG DG+AVVY
Sbjct: 121 KTVRMGYDGKGQVRVKTREELHNAYAGMNGVACVLEKMLPLAYEISVLAARGADGKAVVY 180

Query: 221 PIAENVHRDGILFTTTVPGPNIKADAAERAQQAALQIIGAMQYVGVLCIEFFVLEDGALV 280
           PIAENVHR+GILFTTTVPGPNI   +A++AQ A L +I  + YVGVLCIEFFVL DG+LV
Sbjct: 181 PIAENVHRNGILFTTTVPGPNITKASADKAQAATLAVIEQLGYVGVLCIEFFVLTDGSLV 240

Query: 281 VNEMAPRPHNSGHYTIDACVTSQFEQQVRAMARLPLGDTRQHSPTVMLNILGDVWYEDDT 340
           VNEMAPRPHNSGHYTIDAC+TSQF QQ RAMARLPLGD RQHSP  MLNILGD+W+E D+
Sbjct: 241 VNEMAPRPHNSGHYTIDACITSQFAQQARAMARLPLGDVRQHSPAAMLNILGDIWFEGDS 300

Query: 341 DAQREPAWDQVLALPGAHLHLYGKAEARRGRKMGHVTFTGATLADAQRQLAAACAILGIA 400
           D  REPAWD+VLALPGA+LHLYGK  ARR RKMGH+TF  ATL +AQ  L  AC ILGIA
Sbjct: 301 DEAREPAWDKVLALPGANLHLYGKDNARRARKMGHITFVAATLDEAQANLRKACDILGIA 360


>gi|152980979|ref|YP_001353684.1| phosphoribosylglycinamide
           formyltransferase 2 [Janthinobacterium sp. Marseille]
          Length = 406

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 28/387 (7%)

Query: 4   QSASTLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADRL 63
           +S +  R   P +  AT + ++G G+LG+    + Q +G +V  ++  ++ P  QVA R 
Sbjct: 3   KSNTINRIGTPLSATATKVMLLGSGELGKEVIISLQRLGVEVIAVDRYSNAPGHQVAHRS 62

Query: 64  INAAYDDGAALAEL--GALCAAVTTEFENVSAKSLATL--ALQTFVAPAASGVSIAQDRT 119
                 D  ALAEL        +  E E ++   L  L  A    V P A    +  DR 
Sbjct: 63  YVIDMTDEVALAELINQEKPDLIVPEIEAIATAKLVELENAGTIRVIPTARAAWLTMDRE 122

Query: 120 AEKAFFTECGSQSGVLPAPHLVINSEADIDGLDANL-LPGILKTARMGYDGKGQVRVRSV 178
             +    E   + G   +P+   ++  ++    A +  P I+K   M   GKGQ ++ S 
Sbjct: 123 GIRRLAAE---ELGCATSPYRFADNLKELQAGCAEIGFPCIVKPV-MSSSGKGQSKLSSS 178

Query: 179 EEVRNAFAA------MKGVTCVLEKMLPLAYEVSVLVAR--GHDGQAVVY---PIAENVH 227
            +V  A+        +     ++E  +   YE+++L  R  G DG+   +   PI  +V 
Sbjct: 179 ADVAAAWDCAAAGGRVDSGRVIVEGFIDFEYEITLLTVRAIGADGEVHTHFCEPIG-HVQ 237

Query: 228 RDGILFTTTVPGPNIKADAAERAQQAALQIIGAMQYVGVLCIEFFVLEDGALVVNEMAPR 287
            +G    +  P   +   A ++A + A ++   +  +G+  +E FV +D  +  +E++PR
Sbjct: 238 VNGDYVESWQP-QRMHPGALQKAHEIAKRVTDNLGGLGLFGVELFV-KDDMVWFSEVSPR 295

Query: 288 PHNSGHYTIDACVTSQFEQQVRAMARLPLGDTRQHSPTVMLNILGDVWYEDDTDAQREPA 347
           PH++G  T+ +   S+FE   +A+  LP+ +    +P     I G      D        
Sbjct: 296 PHDTGMVTMASQEQSEFELHAKAILGLPV-NVALSTPAASAVIYG----RHDGKVVSFEG 350

Query: 348 WDQVLALPGAHLHLYGKAEARRGRKMG 374
             + L +PG  + L+GK E+   R+MG
Sbjct: 351 VAEALHIPGTDIRLFGKPESFARRRMG 377


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 828,588
Number of extensions: 31459
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 316
Effective length of database: 906,776
Effective search space: 286541216
Effective search space used: 286541216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)