BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0635.p
         (298 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980348|ref|YP_001354535.1| phosphoribosylaminoimidazole-su...   510   e-146

>gi|152980348|ref|YP_001354535.1|
           phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Janthinobacterium sp. Marseille]
          Length = 298

 Score =  510 bits (1314), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/297 (81%), Positives = 272/297 (91%)

Query: 1   MSSLYKSSITSLPLLGTGKVRENYAVGDDKLLIVTTDRLSAFDVIMNEPIPGKGKVLNQM 60
           M+SLY+S+ITSLPLLG GKVRENYAVGDDK+LIVT+DRLSAFDV+MNEPIP KG+VLNQM
Sbjct: 1   MTSLYQSTITSLPLLGRGKVRENYAVGDDKILIVTSDRLSAFDVVMNEPIPTKGQVLNQM 60

Query: 61  SDFWFDKLGHIVPNHLTGIDPESVVSPAEVEQVRGRAVVAKRLKPILVEAVVRGYIIGSG 120
           SDFWF+KL  IVPNHLTGI PESVV+P EV QV+ RAVVAKRL+PILVEAVVRGY+IGSG
Sbjct: 61  SDFWFEKLKDIVPNHLTGIAPESVVAPDEVAQVKNRAVVAKRLEPILVEAVVRGYLIGSG 120

Query: 121 WKDYQATGAICGIQLPAGLQQASKLEQPIFTPAAKADLGEHDENISFEETEKRIGTELAH 180
           W DY+ATGA+CG+ LPAGL+QA KL +PIFTPAAKA++GEHDENI+F + E+RIG ELA+
Sbjct: 121 WNDYKATGAVCGVALPAGLKQAEKLAEPIFTPAAKAEMGEHDENITFADMEQRIGKELAN 180

Query: 181 KIRDVAIQLYKEAADYAATRGIIIADTKFEFGLDDNGVLHLMDEVLTADSSRFWPADSYQ 240
           KIRDV+I+LYK AADYAATRGIIIADTKFEFGLD +G LHLMDEVLTADSSRFWPADSY 
Sbjct: 181 KIRDVSIKLYKTAADYAATRGIIIADTKFEFGLDKDGTLHLMDEVLTADSSRFWPADSYA 240

Query: 241 VGISPPSFDKQFVRDYLETVEGWQKTPPAPALPADVIEKTGAKYREALERLTGNKLK 297
            GISPPSFDKQFVRDYLET+  W+KT PAPALPA+VIEKTGAKYREAL RLTG +LK
Sbjct: 241 TGISPPSFDKQFVRDYLETLTEWKKTAPAPALPAEVIEKTGAKYREALTRLTGEELK 297


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 715,694
Number of extensions: 30220
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 215
Effective length of database: 914,170
Effective search space: 196546550
Effective search space used: 196546550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)