BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0633.p
         (477 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980607|ref|YP_001352073.1| pyruvate kinase [Janthinobacter...   318   4e-88

>gi|152980607|ref|YP_001352073.1| pyruvate kinase [Janthinobacterium
           sp. Marseille]
          Length = 472

 Score =  318 bits (815), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/477 (40%), Positives = 278/477 (58%), Gaps = 13/477 (2%)

Query: 2   SRATKIVATIGPASSDRETLTRMIRAGVDVVRLNFSHGKPQDHIDRATLVREVADECGKK 61
           +R  KIVAT+GPAS D ET++ +  AGVD+ R NFSHG  +DH  R  +VR +  + G+ 
Sbjct: 4   NRKAKIVATLGPASGDVETISALFEAGVDMFRFNFSHGSHEDHRARHEIVRSLETKYGRP 63

Query: 62  VAIMADLQGPKIRVGKFENGKIMLANGDKFILDADCQMGNQERVGLDYKALPRDLKGNDI 121
           VAI+ DLQGPKIR+G F     +LA G +F+LD D   G+  RV L +  L   +K    
Sbjct: 64  VAILCDLQGPKIRLGTFNGDSAVLAEGSQFVLDRDQTPGDATRVYLPHPELFAVVKAGQN 123

Query: 122 LLLNDGLIVLKVERVMGNEIHTVVKIGGELSNNKGINRQGGGLSAPALTAKDMDDIKTAM 181
           LL +DG I + +E   G+ I T V  GG++SN KG+N     L  PA+T KD+ D++ A+
Sbjct: 124 LLFDDGKIRVSIESNSGDRIVTRVTTGGKISNRKGVNVPDAILPIPAMTPKDLVDLEFAL 183

Query: 182 SFQADYVAVSFPKNATDMEMARQLSNVAGEPFGHKPMMIAKIERAEAIPLLQEILDASDG 241
           S   D+VA+SF +  +D+E AR++        G + ++ +KIE+  A+  +  I  ASD 
Sbjct: 184 SLGVDWVALSFVQQVSDIEDARKI-------IGDRALIQSKIEKPAAMLDIDAICKASDS 236

Query: 242 IMVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTITATQMMESMIVNAVPTRAEVSDVA 301
           +MVARGDL VE+  + VP  QK +I+++R   + TI AT M+ESM  + +PTRAE SDVA
Sbjct: 237 VMVARGDLGVELPISQVPRAQKEIIRVSRKYGRPTIVATHMLESMTESPMPTRAEASDVA 296

Query: 302 NAVLDGTDAVMTSAETASGKYPVETVEAMSAICLEAERSDNVQ---LDADFLNLRFTRVD 358
           NA+ +G DAVM SAE+ASGK PV  V+ M +I  E E SD V    LDA  +  R T  D
Sbjct: 297 NAIYEGADAVMLSAESASGKNPVRAVQMMDSIIKEVE-SDPVYRTLLDAQQVTPRPTAED 355

Query: 359 QSIAYGALFTAHHLRVKAIAALTESGSTALWMSRHNIDIPIFAITPNVATRRKASLFRNV 418
            +I      T   ++  A    T+SGST++  +R      I +ITP + T R+ +    +
Sbjct: 356 -AICNALRDTTAAIKAVATVTYTKSGSTSMSAARVRPTTSILSITPELKTARRLAWVWGI 414

Query: 419 HTLELAQ-APDTEAMLKGAQDLLLAQGVVQKGDLIVVTWGEPIGQVGGTNALKILRV 474
           H++   Q     + M+  A    + +G  +KGD I ++ G P G+ G TN L I  V
Sbjct: 415 HSIVGGQDVKSVDDMVSEAVAAAVHEGFAKKGDYIAISAGLPFGESGTTNLLHIATV 471


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,033,021
Number of extensions: 41812
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 390
Effective length of database: 899,382
Effective search space: 350758980
Effective search space used: 350758980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)