BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0631.p
         (306 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979801|ref|YP_001354538.1| branched-chain amino acid amino...   575   e-165
gi|152980490|ref|YP_001354939.1| D-alanine transaminase [Janthin...    76   3e-15

>gi|152979801|ref|YP_001354538.1| branched-chain amino acid
           aminotransferase [Janthinobacterium sp. Marseille]
          Length = 306

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 268/306 (87%), Positives = 289/306 (94%)

Query: 1   MSMADRDGKIWKDGALIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPEGTAIFRLKEHTQ 60
           MSM+DRDGKIWKDG LIDWRDATVHVLTHTLHYGMGVFEGVRAYKT +GTAIFRL+EHT+
Sbjct: 1   MSMSDRDGKIWKDGKLIDWRDATVHVLTHTLHYGMGVFEGVRAYKTDKGTAIFRLREHTE 60

Query: 61  RLFNSAKIFQMVVPFDQATLAEAQRQVVRENNLESCYIRPLIWIGSEKLGVSAKGNQIHV 120
           RLFNSAKIFQ+ +PFD  T+ EAQ QVVREN LE+CY+RPL+WIG EKLG+SAKGN IH+
Sbjct: 61  RLFNSAKIFQLKIPFDLETVMEAQLQVVRENKLETCYLRPLVWIGEEKLGISAKGNTIHI 120

Query: 121 AIAAWPWGAYLGEDGINKGIRVKTSSFTRHHVNVSLVRAKACGYYINSILANQEALADGY 180
           AIAAWPWGAYLGEDG+NKGIRVKTSSF+RHHVNVSLVRAKACGYYINSILANQEAL DGY
Sbjct: 121 AIAAWPWGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALTDGY 180

Query: 181 DEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTMARDLGIEVIEKR 240
           DEALLLDT+GYVSEGSGENVFIVKNGK+YTPDLASCLDGITRDAVLTMARDLGIEVIEKR
Sbjct: 181 DEALLLDTDGYVSEGSGENVFIVKNGKVYTPDLASCLDGITRDAVLTMARDLGIEVIEKR 240

Query: 241 ITRDEMYCADEAFFTGTAAEVTPIRELDRRVIGNGARGPITEKLQSLFFDVVSGRAPQYR 300
           ITRDEMYC DEAFFTGTAAE+TPIRELD R IG+G RGPIT KLQSLFFDVV+G+APQY 
Sbjct: 241 ITRDEMYCCDEAFFTGTAAEITPIRELDNRQIGDGKRGPITTKLQSLFFDVVAGKAPQYS 300

Query: 301 HWLTLV 306
           HWLT+V
Sbjct: 301 HWLTIV 306


>gi|152980490|ref|YP_001354939.1| D-alanine transaminase
           [Janthinobacterium sp. Marseille]
          Length = 283

 Score = 75.9 bits (185), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 32/292 (10%)

Query: 5   DRDGKIWKDGALIDWRDATVHVLTHTLHYGMGVFEGVRAY-KTPEGTAIFRLKEHTQRLF 63
           D+D  ++ +G +    +A + VL     +G G++E V  Y + P     FR K+H QRLF
Sbjct: 2   DKDPIVYLNGNMTPLSEAKISVLDRGFIFGDGIYEVVPIYARKP-----FRPKQHLQRLF 56

Query: 64  NSAKIFQMVVPFDQATLAEAQRQVVRENNLESCYIRPLIWIGSEKLGVSAKGNQIHVAIA 123
                  +  P  +    +   QVV+   +       LI+I   + GV+ + +       
Sbjct: 57  RGLAAIGIDNPHTETEWLDLVSQVVQAAPMSDQ----LIYIQVTR-GVARRSH------- 104

Query: 124 AWPWGAYLGEDGINKGIRVKTSSFTRHHVNVSLV-----RAKACGYYINSILANQEALAD 178
           A+P    L       G  +   S       V+ V     R   C     S+L N  A  +
Sbjct: 105 AFP-NTELTPTVFIMGNPLTLPSDEARATGVACVTMEDKRWLHCEIKSISLLGNVLAAQN 163

Query: 179 GYDEALLLDTE---GYVSEGSGENVFIVKNGKIYTPDLASC-LDGITRDAV--LTMARDL 232
             +       +   G+++EGS  NV+IVK G +  P   +  L+GI    +  L  A D+
Sbjct: 164 AAENNANESIQFRDGFLTEGSASNVWIVKQGILAGPPTDNLILEGIRYGLIEELCAANDI 223

Query: 233 GIEVIEKRITRDEMYCADEAFFTGTAAEVTPIRELDRRVIGNGARGPITEKL 284
             ++  +RI+RDE++ ADE   +  + E+ P+  +D + IGNG  GPI +KL
Sbjct: 224 PFQL--RRISRDEVFAADEVLLSSASKEILPVVTIDGKSIGNGLPGPIYKKL 273


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 737,518
Number of extensions: 30204
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 223
Effective length of database: 914,170
Effective search space: 203859910
Effective search space used: 203859910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)