BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0628.p
         (330 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981223|ref|YP_001354541.1| hypothetical protein mma_2851 [...   472   e-134

>gi|152981223|ref|YP_001354541.1| hypothetical protein mma_2851
           [Janthinobacterium sp. Marseille]
          Length = 318

 Score =  472 bits (1215), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/315 (69%), Positives = 262/315 (83%)

Query: 1   MLYIPPRWLPGGHLQTIYPSTCLPKPELAYRRERWEAPDGDFIDIDFVDGQPGRPLLVLF 60
           M Y  P WLPGGHLQTIYP+  + KP ++YRRERW+ PDGDF+D+DFVDG    P +VLF
Sbjct: 1   MNYPAPCWLPGGHLQTIYPAKFISKPTVSYRRERWDTPDGDFVDLDFVDGPKDLPFIVLF 60

Query: 61  HGLEGSSDSHYSRALMAEVQRRGWHGAIPHFRGCSGEINLAPRFYHSGDSAELDWIIRRL 120
           HGLEGSS SHY+R+LMA +   GW GA+ HFRGCSGE+N APRFYHSGD+ E+DWI++RL
Sbjct: 61  HGLEGSSASHYARSLMAHIAGLGWSGAVVHFRGCSGELNHAPRFYHSGDAPEIDWILKRL 120

Query: 121 KLRQQDLAATHLYACGVSLGANALLRWLGESQHEAEIVDAACAVSAPLDLAGGGTALASG 180
               +   A+  YA GVSLG NALLRWLGESQH+AEIVDAACA+SAPLDLAGGG+AL+ G
Sbjct: 121 APYARARGASKFYATGVSLGGNALLRWLGESQHQAEIVDAACAISAPLDLAGGGSALSRG 180

Query: 181 FNRLYTWVFLRTLRPKCLAKLEQFPGLFDRDALLAARDLYAFDNVVTAPLHGYRNTDDYW 240
           FN +YT +FL TL+PKC+AKL QFPGLFDRDA+L +RDLYAFDN+VTAPLHGY+NT+DYW
Sbjct: 181 FNMIYTRIFLETLKPKCVAKLAQFPGLFDRDAMLQSRDLYAFDNIVTAPLHGYQNTEDYW 240

Query: 241 DRASAKHILHDISVPTLVLNAQNDPFLPARHLPRSAAPEVVLEYPAQGGHVGFAAGGPPG 300
            RASAKH+L DI+VPTLVLNAQNDPFLPA++LP  A+ +V LEYPA GGHVGFA G  PG
Sbjct: 241 HRASAKHVLKDITVPTLVLNAQNDPFLPAQYLPSKASNKVTLEYPAHGGHVGFAVGCIPG 300

Query: 301 SLEWLPRRLLHFLEG 315
            L WLP+R++ FL+G
Sbjct: 301 KLNWLPQRMVRFLQG 315


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 802,852
Number of extensions: 31269
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 246
Effective length of database: 910,473
Effective search space: 223976358
Effective search space used: 223976358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)