BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0627.p
         (200 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982875|ref|YP_001354542.1| hypothetical protein mma_2852 [...   179   1e-46

>gi|152982875|ref|YP_001354542.1| hypothetical protein mma_2852
           [Janthinobacterium sp. Marseille]
          Length = 199

 Score =  179 bits (453), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 1   MDEIVRQAMARWPNVPHCFGWLRLDARGLWRMRDERAQQLELPGDPIRHPALRAFIDRNY 60
           MD IV QA+A+WPNVPHC+GWL LDARG WRMR+E  Q+ +L GD I HPAL AFI RNY
Sbjct: 1   MDAIVAQALAKWPNVPHCYGWLALDARGSWRMRNEATQEQQLAGDKISHPALIAFIQRNY 60

Query: 61  GCDEAGRWYFQNGPQRVYVDLEWMPHILRTQPDGQGGLVLVLHTGVTLESVEAAWMDEAG 120
             D  GR+YFQNGPQRVYVDLE  P+I  T+P         LHTG    ++ AA++  +G
Sbjct: 61  THDAQGRYYFQNGPQRVYVDLEVAPYIAHTEPVHG----FTLHTGQHFTNIGAAYLSASG 116

Query: 121 RLYLRAGGVTAGVDDRDLAHLLPCLQTAG-AADEEALLRWL-EGAGNVAPNFTYAGRALP 178
           +L+L      A +DDRD+A  L  +Q  G   ++E LL W+ +  G+ A         + 
Sbjct: 117 KLFLAGDDKLALLDDRDMAQCLAQIQLDGRDVEDEHLLAWIAQSGGSGALTLQSNAHTIA 176

Query: 179 LKRIAAAELEKIFTFVANPR 198
           L  +  A +   F F+  PR
Sbjct: 177 LHYVEDAAISSRFGFIRKPR 196


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 490,757
Number of extensions: 19398
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 121
Effective length of database: 928,958
Effective search space: 112403918
Effective search space used: 112403918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)