BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0625.p
         (168 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979773|ref|YP_001354544.1| molybdenum cofactor biosynthesi...   244   2e-66

>gi|152979773|ref|YP_001354544.1| molybdenum cofactor biosynthesis
           protein C [Janthinobacterium sp. Marseille]
          Length = 167

 Score =  244 bits (624), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 137/162 (84%), Gaps = 1/162 (0%)

Query: 1   MTTSGDH-APNGGLTHFDQGGQAHMVDVGGKNETQRVALATGVIRMQAATLAIIESGTAK 59
           MT+  D+   N GLTHFD  GQAHMVDVG KNET R+A+A+GVIRM+A TLAII SGTAK
Sbjct: 1   MTSQKDNPTANDGLTHFDATGQAHMVDVGSKNETHRIAIASGVIRMKAETLAIISSGTAK 60

Query: 60  KGDVLGIARIAAIMAAKRTGELIPLCHPLALTHVSVEFETDAANACVRCTARVETFGKTG 119
           KGDVLGIARIAAIM AKRT +LIPLCHPLALT V+V+F    AN+ V CTA+VETFGKTG
Sbjct: 61  KGDVLGIARIAAIMGAKRTSDLIPLCHPLALTRVTVDFAVSEANSSVTCTAQVETFGKTG 120

Query: 120 VEMEALTAVQVGLLTVYDMCKAVDKRMVMTDICVTEKRGGKS 161
           VEMEALTAVQ+GLLT+YDMCKAVD+ MVM+D+ V EK GGKS
Sbjct: 121 VEMEALTAVQIGLLTIYDMCKAVDRGMVMSDVRVEEKHGGKS 162


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 356,938
Number of extensions: 12413
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 91
Effective length of database: 936,352
Effective search space: 85208032
Effective search space used: 85208032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)