BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0624.p
         (168 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982991|ref|YP_001354546.1| Tfp pilus assembly protein pilE...    66   1e-12

>gi|152982991|ref|YP_001354546.1| Tfp pilus assembly protein pilE
           [Janthinobacterium sp. Marseille]
          Length = 151

 Score = 65.9 bits (159), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 17/136 (12%)

Query: 7   RRAQQGFTLLELMVTLAVIGILAMLGASQYQDYIVRARVSEGFNLAEPYKLAV------- 59
           ++AQ GFTL+ELM+ +A+IGILA +    YQDY V+A+V E  +L+ P + AV       
Sbjct: 5   KKAQSGFTLIELMIVVAIIGILAAVALPAYQDYTVKAKVQEAVSLSSPARTAVGMACSEA 64

Query: 60  -TEQISSNNGVFTVAQLGLPAFTPTDNVSKIEVSPMEKRGVGGVITITYG----PRVGDG 114
                S++N    +AQ    +   TD V+    S  E      ++TIT        + +G
Sbjct: 65  ALSAASTSNTTLQLAQDTEYSGKYTDKVAVTATSASE-----ALVTITMKNGSISAIPNG 119

Query: 115 GSLTLTPTIASGTIQW 130
            ++  T T   G ++W
Sbjct: 120 ATIVYTGTCGDGGLKW 135


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 404,748
Number of extensions: 16681
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 91
Effective length of database: 936,352
Effective search space: 85208032
Effective search space used: 85208032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)