BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0623.p (245 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981773|ref|YP_001354867.1| TerC family integral membrane p... 231 3e-62 gi|152981754|ref|YP_001354610.1| TerC family integral membrane p... 199 1e-52 gi|152981717|ref|YP_001351932.1| integral membrane protein TerC ... 147 4e-37 >gi|152981773|ref|YP_001354867.1| TerC family integral membrane protein [Janthinobacterium sp. Marseille] Length = 237 Score = 231 bits (589), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 174/240 (72%), Gaps = 7/240 (2%) Query: 1 MELL-TNLNWVAVAQIILIDILLGGDNAIVIALACRNLPDKLRMKGIVWGTVGAIAIRIA 59 MELL T W A+ IILI+I+L GDNA+VIALA ++LP K + +++G+ AI +RI Sbjct: 1 MELLGTPAFWAALGNIILINIVLSGDNAVVIALAAKSLPPKQKKMAVIYGSAAAIILRIV 60 Query: 60 LIAFAVTMLQLPYLKLVGGILLLWIGIKLLNEEDEHTDINGSDRLWGAVKTVIVADLVMS 119 L FA+ +L LPYLKL+G +LL +IG++LL E+ +I G LWGA+KT+++ADLVMS Sbjct: 61 LTIFALQLLTLPYLKLIGAVLLFYIGVQLLAEDGGEENIEGHSNLWGAIKTILIADLVMS 120 Query: 120 LDNVIAIASAAEQAAGEHQLLLVVFGIVVSIPIIVWGSTLVLKLMEKFPVIVTLGAALLG 179 LDNV+ +A+AA ++L++ G+ +S+P+IV+GS LVLKLMEKFP+I+TLGAALLG Sbjct: 121 LDNVLGVAAAANG-----NVVLLIIGLAISVPLIVFGSALVLKLMEKFPIIITLGAALLG 175 Query: 180 YIAGGMIFSDAAMQAWLRDVIAETEFILPGAAVHLSLPGLVGALGVVLTGLTLKRRKAEQ 239 Y+AG M+FSD A+ W+ + E L G++ HLS+PGLV A+GVV+ G L +R ++ Sbjct: 176 YLAGEMLFSDTAVTPWIAANMPHHEIGLFGSS-HLSIPGLVLAIGVVIVGTYLGKRHHKE 234 >gi|152981754|ref|YP_001354610.1| TerC family integral membrane protein [Janthinobacterium sp. Marseille] Length = 230 Score = 199 bits (506), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 160/234 (68%), Gaps = 16/234 (6%) Query: 9 WVAVAQIILIDILLGGDNAIVIALACRNLPDKLRMKGIVWGTVGAIAIRIALIAFAVTML 68 WVA+ QI++I+ILL GDNA++IALACR+LP K + + GTV + + L A A +L Sbjct: 11 WVALFQIVIINILLSGDNAVIIALACRSLPPKDQRNAFLIGTVAIVLLMTGLTAIASYLL 70 Query: 69 QLPYLKLVGGILLLWIGIKLLNEEDEHTDINGSDRLWGAVKTVIVADLVMSLDNVIAIAS 128 +PY+++VG ILLLWIGIKLL EDE+ ++N SD WGAVKT+I+AD+VMSLDNV+ +A Sbjct: 71 TIPYVEVVGAILLLWIGIKLLIPEDENAELNASDNFWGAVKTIIIADIVMSLDNVLGMAG 130 Query: 129 AAEQAAGEHQLLLVVFGIVVSIPIIVWGSTLVLKLMEKFPVIVTLGAALLGYIAGGMIFS 188 AA G LL V G+V++IP+I++GS ++++LME+FP+IVTLGA LLGY+AG M Sbjct: 131 AAN---GHMGLLFV--GMVITIPLILFGSAMLMRLMERFPIIVTLGAGLLGYVAGEMAVE 185 Query: 189 DAAMQAWLRDVIAETEFILPGAAVHLSLPGLVGALGVVLTGLTLKRRKAEQQHT 242 D A++ + IA ++ ++LP ++G L V+ G L R+A T Sbjct: 186 DPALKGF----IANAHYL------EIALP-ILGVLIVIGFGKLLAARQAPALST 228 >gi|152981717|ref|YP_001351932.1| integral membrane protein TerC [Janthinobacterium sp. Marseille] Length = 234 Score = 147 bits (372), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/190 (48%), Positives = 134/190 (70%), Gaps = 9/190 (4%) Query: 11 AVAQIILIDILLGGDNAIVIALACRNLPDKLRMKGIVWGTVGAIAIRIALIAFAVTMLQL 70 A+ II+ID++L GDNAIVIAL R LP L+ I+ GTVGA+A+RIA+ V +L + Sbjct: 9 ALLAIIIIDLVLAGDNAIVIALVARKLPQHLQRITIIGGTVGAVAVRIAMTIAIVWLLNV 68 Query: 71 PYLKLVGGILLLWIGIKLL---NEEDEHTDINGSD-RLWGAVKTVIVADLVMSLDNVIAI 126 P L LVGG+LL+WI KLL ++E +H D++ S LWGA++T+IVAD VM +DNV+ + Sbjct: 69 PGLLLVGGVLLVWIAYKLLAPVHQEKKHADVSASRVGLWGAIRTIIVADAVMGMDNVLGV 128 Query: 127 ASAAEQAAGEHQLLLVVFGIVVSIPIIVWGSTLVLKLMEKFPVIVTLGAALLGYIAGGMI 186 A AA +LVV G+++S+PI+V GSTL+LK +E++P+I+ +GA +L + A MI Sbjct: 129 AGAAHG-----DFMLVVLGLLISVPIMVLGSTLILKWVERYPIIIYIGAGVLAWTAAKMI 183 Query: 187 FSDAAMQAWL 196 S+ +QA+L Sbjct: 184 ASEPLVQAYL 193 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.142 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 349,560 Number of extensions: 8055 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 4 Length of query: 245 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 164 Effective length of database: 921,564 Effective search space: 151136496 Effective search space used: 151136496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)