BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0622.p
         (293 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980019|ref|YP_001352081.1| succinyl-CoA synthetase subunit...   486   e-139
gi|152981509|ref|YP_001352806.1| oxidoreductase [Janthinobacteri...    57   2e-09

>gi|152980019|ref|YP_001352081.1| succinyl-CoA synthetase subunit
           alpha [Janthinobacterium sp. Marseille]
          Length = 291

 Score =  486 bits (1251), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/293 (82%), Positives = 258/293 (88%), Gaps = 2/293 (0%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60
           MSILINKDTKVITQGITGKTGQFHT+MC +YANGKN FVAGVNPKKAGE FEG+PIY +V
Sbjct: 1   MSILINKDTKVITQGITGKTGQFHTKMCIEYANGKNCFVAGVNPKKAGESFEGVPIYGSV 60

Query: 61  TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120
            EAK  TGATVSVIYVPP  AAAAI EAV+A +DL ICITEGIPVRDM+  K RM   G 
Sbjct: 61  AEAKAETGATVSVIYVPPPFAAAAIDEAVDAGVDLVICITEGIPVRDMIRTKQRME--GK 118

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEA GQL   GLGQS+ 
Sbjct: 119 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAAGQLAEFGLGQSTV 178

Query: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240
           VGIGGDP++GLKHIDV++ FNDDPDTDAVIM+GEIGG  E   ARWIKDNMKKPVVGFIA
Sbjct: 179 VGIGGDPVSGLKHIDVLRMFNDDPDTDAVIMVGEIGGDAEETCARWIKDNMKKPVVGFIA 238

Query: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293
           GVTAP GKRMGHAGA+ISGG  TA+ KLA+ME CGIKVTRNP+EMGRLLKSVL
Sbjct: 239 GVTAPAGKRMGHAGAIISGGKGTAQEKLAVMEACGIKVTRNPAEMGRLLKSVL 291


>gi|152981509|ref|YP_001352806.1| oxidoreductase [Janthinobacterium
           sp. Marseille]
          Length = 516

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 18/209 (8%)

Query: 45  KKAGEDFEGIPIYANVTEAK-NATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGI 103
           KK G   E    YA +  A+ N  G+ ++V+ V  A A      A+E  L++ +  ++ +
Sbjct: 90  KKPGAKGEHQAKYATLASARENVPGSNLAVVSVNGAYAVREARAALEQGLNVML-FSDNV 148

Query: 104 PVRDMLALKDRMAKAGSKTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLT 163
            V D LALK      G   L++GP+C   I  ++    +  G+  ++G IG++  SGT +
Sbjct: 149 SVEDELALKQLAHSKG--LLMMGPDCGTAIINNK---ALCFGNHVRQGNIGIIGASGTGS 203

Query: 164 YEAVGQLTALGLGQSSAVGIGG----DPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPD 219
            E   ++   G G S  +G GG    + I G+  +D M+  + D  T  +++I +   P 
Sbjct: 204 QELSVRIHDFGGGVSQLIGTGGRDLHEKIGGIMMLDAMRMLDADDQTKVIVLISK---PP 260

Query: 220 EANAARWIKDNM---KKP-VVGFIAGVTA 244
            A+  + +   +    KP VV FI G  A
Sbjct: 261 AASVEKKVLAEISRCSKPVVVCFIGGKEA 289


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 688,954
Number of extensions: 29833
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 211
Effective length of database: 917,867
Effective search space: 193669937
Effective search space used: 193669937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)