BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0621.p
         (386 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980238|ref|YP_001352080.1| succinyl-CoA synthetase beta ch...   595   e-171

>gi|152980238|ref|YP_001352080.1| succinyl-CoA synthetase beta chain
           [Janthinobacterium sp. Marseille]
          Length = 388

 Score =  595 bits (1534), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/386 (77%), Positives = 342/386 (88%)

Query: 1   MKIHEYQGKEILRQFGVTVPRGIPCMSVDEVEAAAQKLGGPVWVVKAQIHAGGRGKGGGV 60
           M IHEYQGKEILR++GVT P+G PC SVDE   AA+KLGG VWVVKAQIHAGGRGKGGGV
Sbjct: 1   MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKLGGKVWVVKAQIHAGGRGKGGGV 60

Query: 61  KVAKSIEQVKEYANQIMGMQLVTHQTGPEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120
           KVAKS+++V++YAN I+GM LVTHQTGPEG+ V+RLLIEEGADIKKELYV +V DR SQ+
Sbjct: 61  KVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQR 120

Query: 121 VVLMASSEGGMDIEEVAHSHPEKIHNVIIDPIDGLTDAQADDVAAKIGVPAESIPAARQN 180
           V LMASSEGGMDIE VA   PEKIH V IDP+ GL D++ADD+A KIGVP  SI  AR  
Sbjct: 121 VALMASSEGGMDIEHVAEHTPEKIHKVFIDPVKGLLDSEADDIARKIGVPEGSIGQARAF 180

Query: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240
           +QGLYKA+ ETDASLAEINPLI+TGD +++ALDAKFNFDSNA++RHPEI   RDLDEEDP
Sbjct: 181 MQGLYKAFDETDASLAEINPLIVTGDDRIVALDAKFNFDSNAMYRHPEIQEMRDLDEEDP 240

Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300
           AE+EASKFDL YISLDGNIGCLVNGAGLAMATMD IKL+GG PANFLDVGGGATTEKVTE
Sbjct: 241 AEIEASKFDLTYISLDGNIGCLVNGAGLAMATMDVIKLYGGSPANFLDVGGGATTEKVTE 300

Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360
           AFKIMLKNP++KAILVNIFGGIM+CDVIA+GVIAA+K V L VPLVVRM GTNE+LGKK+
Sbjct: 301 AFKIMLKNPDIKAILVNIFGGIMKCDVIAQGVIAAAKQVDLTVPLVVRMAGTNEELGKKI 360

Query: 361 LADSGLPIISADSMEEAAQKVVAAAK 386
           LA+SGLPII+A++M EAA+KVV AA+
Sbjct: 361 LAESGLPIITANNMAEAAEKVVNAAQ 386


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 822,244
Number of extensions: 33503
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 301
Effective length of database: 906,776
Effective search space: 272939576
Effective search space used: 272939576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)