BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0619.p
         (154 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979808|ref|YP_001354550.1| RecX regulatory protein [Janthi...   176   5e-46

>gi|152979808|ref|YP_001354550.1| RecX regulatory protein
           [Janthinobacterium sp. Marseille]
          Length = 151

 Score =  176 bits (447), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 115/152 (75%), Gaps = 1/152 (0%)

Query: 1   MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSEERFSE 60
           M +  +SLKARAL+YLS+REHSR EL RKLA +AQEGDD+EALL  LE ++FLS+ RFSE
Sbjct: 1   MAKLQVSLKARALRYLSAREHSRQELGRKLARHAQEGDDVEALLDTLEAAKFLSQSRFSE 60

Query: 61  SLVHRRSARYGNQRIFSELHGHGIEGEAIADLKADLAAGEGERAAQVLRRKFSAPPADAE 120
           SLVHRR+AR+GN RI SEL  HGI+ +++ D+KA+L + E  RA  V  RKF     + E
Sbjct: 61  SLVHRRAARFGNSRILSELKSHGIDPDSLTDIKANLESDEFARARAVWERKFGTVATNQE 120

Query: 121 TRAKQMRFLQQRGFSHRSIREAFQMAWAEDED 152
            RAKQMRFL QRGFSHR+I+ A + A  +DED
Sbjct: 121 ERAKQMRFLMQRGFSHRAIQAAMRAA-GKDED 151


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 299,731
Number of extensions: 9444
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 78
Effective length of database: 940,049
Effective search space: 73323822
Effective search space used: 73323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)