BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0617.p (542 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982806|ref|YP_001353651.1| hypothetical protein mma_1961 [... 625 e-180 gi|152982637|ref|YP_001355120.1| hypothetical protein mma_3430 [... 219 3e-58 gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthi... 72 1e-13 >gi|152982806|ref|YP_001353651.1| hypothetical protein mma_1961 [Janthinobacterium sp. Marseille] Length = 542 Score = 625 bits (1612), Expect = e-180, Method: Compositional matrix adjust. Identities = 305/539 (56%), Positives = 420/539 (77%) Query: 1 MSLVPFSHISALRCLVIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSSTYDLI 60 M+ + S ++ LR LV+DDMPTMRQNIR LGQLG+ +VDQ+ATP++AI+ ++++ YD+I Sbjct: 1 MATILNSRLAKLRALVVDDMPTMRQNIRTQLGQLGIEQVDQSATPNDAIKRIRNTNYDVI 60 Query: 61 ICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLT 120 +CDYNLNKE+NGQQ+LE+ R+Q +LSPT MF MVTAES Y+ VASAAEFQPDAYM+KPLT Sbjct: 61 VCDYNLNKETNGQQVLEYLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPLT 120 Query: 121 ASRIAERVDRLLEKQHAMLPVTEKMKRKDMAGAIIECDNVLKAAPKWIVEIMKTKGTLLI 180 +IA+R++RLL++Q A+ P+T++++ KD++GAI ECD VL A PKWIV+I+K KG+ + Sbjct: 121 GGKIADRLERLLDRQQALKPITDRLQMKDLSGAITECDTVLVAEPKWIVDILKIKGSSAL 180 Query: 181 EQRRIDEAREVYKQALAMRDDLVWAKIGLARCNIVAGQMDDARTIVQDVLAQNKQFIAAY 240 E I++AR Y++AL++R DLVWAK+GLARC+ AG++D+A+ V +VL N QF+ AY Sbjct: 181 ELGNINDARATYQKALSLRSDLVWAKLGLARCDQAAGRLDEAKKTVSEVLEANAQFVDAY 240 Query: 241 DLLAQIDEAQGNQEGALEALTKSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHT 300 DLLAQI EAQGN+E L+A KS ++IPSARRSRL+GD AYR G+L+QAR+A++K L HT Sbjct: 241 DLLAQIAEAQGNEEAVLDAFNKSYDVIPSARRSRLMGDAAYRVGNLEQARQAFNKALTHT 300 Query: 301 KGSLTAQPTDLLSLAQVHIDSGDPDAALRLLESAPRRYEESNIFVSAQAAVQAQAYVQLG 360 +GSLTAQ +D LSLAQV +D GD AL +L +A + +++ F + QA + AQA+ +LG Sbjct: 301 RGSLTAQASDALSLAQVQVDIGDAADALNVLSAAAQDHQDDPYFAARQATIAAQAFARLG 360 Query: 361 DTISAQQAFETARQAAAKESSDTTSLALAKAAFSMGKDEEGAQLIAEAIKSDHENKTLQM 420 D SAQ AF +A++ A +D +L LAKAAF +G +EEGA+++A+AIK+DHEN L Sbjct: 361 DMNSAQAAFASAKELADGIRADIHTLTLAKAAFCVGLEEEGARIVAKAIKADHENIRLVA 420 Query: 421 LARKVLADTGRANLAEELIDGAVKQCMSIIAEANALMRSAKPDESLAKLEEALASMPENT 480 AR+VL DTG L E++++ ++ + I+ +A LMR+ + DESLAKLEEAL + PENT Sbjct: 421 FARRVLQDTGNEALIEKVVEESISEGALIVEQATQLMRAGQFDESLAKLEEALTATPENT 480 Query: 481 GVLLASAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLSKVA 539 GVLLA+AQLHLLWMSQ+G + YV+RV YLA LD L+P ++RVAKM++FLR+TL K + Sbjct: 481 GVLLAAAQLHLLWMSQKGLDRNYVERVNAYLAQLDVLMPNSERVAKMYRFLRETLVKAS 539 >gi|152982637|ref|YP_001355120.1| hypothetical protein mma_3430 [Janthinobacterium sp. Marseille] Length = 556 Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 157/539 (29%), Positives = 275/539 (51%), Gaps = 15/539 (2%) Query: 9 ISALRCLVIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSSTYDLIICDYNLNK 68 ++ L L+I+ MR +I L G+ K++ AA AIR ++ +DL+IC+Y+L + Sbjct: 4 LAGLTALIIEPHAGMRASIHNMLSIGGIGKIEYAAGSGSAIRPLKHKQFDLVICEYDLGE 63 Query: 69 ESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERV 128 +GQQLLE R ++ P+ +FIMVTAE + V SAAE + Y+LKP TA + +R+ Sbjct: 64 GQDGQQLLEDLRHHKIMPPSTVFIMVTAERNHEKVVSAAELALNDYVLKPFTAETLMDRI 123 Query: 129 DRLLEKQHAMLPVTEKMKRKDMAGAIIECDNVLKAAPKWIVEIMKTKGTLLIEQRRIDEA 188 R ++K++A+ P+ + +++ +++ AI C + P++ E M+ + L + + EA Sbjct: 124 ARAIDKRNALSPIYQLIEQGNLSDAINGCVLAERTQPRYQAEFMRLRAELHMTLGELPEA 183 Query: 189 REVYKQALAMRDDLVWAKIGLARCNIVAGQMDDARTIVQDVLAQNKQFIAAYDLLAQIDE 248 +Y + A R + WA++GLA + ++++A ++ ++++ KQF+ AYD LA+ E Sbjct: 184 EAIYAEIFAKR-SIAWARLGLATSLFMQDRLEEAEEMLSSLVSEKKQFLEAYDWLAKTQE 242 Query: 249 AQGNQEGALEALTKSSEIIPSA-RRSRLVGDVAYRSGHLDQAREAYDKVLKHTKGSLTAQ 307 A+G A L + P A +R R +G+VA +G +D A + + +V+ K S + Sbjct: 243 ARGLMPKAQATLEHAVIRSPHALQRLRKLGNVALETGDIDTAHKVFQQVINKAKFSEFRE 302 Query: 308 PTDLLSLAQVHIDSGDPDAALRLLESAPRRYEESNIFVSAQAAVQAQAYVQL----GDTI 363 P D + L + I G+ L+L+ R +S V A +A A L G+ Sbjct: 303 PEDHVHLVRTSIAKGE----LQLVPPIIRDLAKSLANVKKTPACRALATAMLHKHNGEDE 358 Query: 364 SAQQAFETARQAAAKES---SDTTSLALAKAAFSMGKDEEGAQLIAEAIKSDHENKTLQM 420 A + E A A KE+ S T LALA+ G E+GA + ++ + Sbjct: 359 QAVEELEAA-VLACKEAIGLSSDTKLALAQNCLDSGL-EQGAVEVMTSVVGNASTNVAMT 416 Query: 421 LARKVLADTGRANLAEELIDGAVKQCMSIIAEANALMRSAKPDESLAKLEEALASMPENT 480 A ++ + GR +LA+ + + Q + +++ R ++A + EA +PEN Sbjct: 417 RAMRLFREAGREDLAKRVTRESKSQVVDLVSAGAEKARLGDYHGAVALMSEAAERLPENP 476 Query: 481 GVLLASAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLSKVA 539 V+ +A L + GW+ + ++ R Y+A RL P N R++ + RD L K A Sbjct: 477 QVVFNAAVAVLKCLDSLGWDVQLGEQARSYIANARRLDPRNPRLSLLASMYRDILKKYA 535 >gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 132 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 13 RCLVIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSSTYDLIICDYNLNKESNG 72 + LV+DD TMR+ +R L +LG T VD+A A+ ++S +D ++ D+N+ +G Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSEQFDFVVSDWNM-PNMDG 65 Query: 73 QQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERVDRLL 132 +L+ R LS + +MVTAE+ + +AA+ + Y++KP TA+ + E++ ++ Sbjct: 66 LTMLQHIRADPALSKLPV-LMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKLAKIF 124 Query: 133 EK 134 EK Sbjct: 125 EK 126 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.129 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,082,513 Number of extensions: 39825 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 3 Length of query: 542 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 454 Effective length of database: 895,685 Effective search space: 406640990 Effective search space used: 406640990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)