BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0616.p
         (201 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982332|ref|YP_001353652.1| two-component sensor histidine ...   207   4e-55

>gi|152982332|ref|YP_001353652.1| two-component sensor histidine
           kinase [Janthinobacterium sp. Marseille]
          Length = 199

 Score =  207 bits (526), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/203 (55%), Positives = 149/203 (73%), Gaps = 6/203 (2%)

Query: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSEDVP--RAQQAHVTCLALQEKLIAFLTLYKAD 58
           MDP+LAAII+HD+KN+LG LEGEL  L+ED+   +A +AH  CLAL++K+I FLTLYKA 
Sbjct: 1   MDPQLAAIIVHDLKNALGELEGELAALTEDLDHGKASEAHHHCLALRDKMIGFLTLYKAS 60

Query: 59  SQGLRAQVEAVSPLDFLDALVREQSVSRSSDIALTVDETEMPVIGFFDEHLVALALEAAL 118
           +QGL+  +EAV+P  FL  L+R  +    + I +T+D  +MP I FFDEHL+ LAL+AAL
Sbjct: 61  TQGLQPHIEAVNPEGFLKGLIRAHN---KAGITITLDTDDMPAIAFFDEHLLGLALDAAL 117

Query: 119 QNASRFARTQIAVGCRKHPEGGVIFTVRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNKE 178
           QNA RFA++ I VGC+   +   +FT++DDGPG+GT E+KPSTG+GM L  AIA AH+ E
Sbjct: 118 QNALRFAKSSIVVGCKTIADE-TVFTIQDDGPGLGTPEEKPSTGMGMALSGAIAAAHHNE 176

Query: 179 TQHGEARLSNHPEGGALFELCLP 201
            + G  RL + P GGALF L LP
Sbjct: 177 LREGRVRLHSLPHGGALFCLYLP 199


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 422,571
Number of extensions: 14914
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 122
Effective length of database: 928,958
Effective search space: 113332876
Effective search space used: 113332876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)