BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0615.p (328 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bica... 463 e-132 gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, peri... 130 1e-31 gi|152981615|ref|YP_001355155.1| ABC-type nitrate/sulfonate/bica... 123 1e-29 gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, peri... 117 1e-27 gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport sys... 105 3e-24 >gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 332 Score = 463 bits (1192), Expect = e-132, Method: Compositional matrix adjust. Identities = 222/325 (68%), Positives = 269/325 (82%) Query: 1 MQRRHFLRLAPAALGATLLGSTPLIAGAAQPPKTLRLDYAYYSPPSLVLRKFGWLEEDLK 60 M RR F++ A L S L A AA P+ +RLDYAYYSP SLVL+ FGWLEE +K Sbjct: 1 MDRRFFIKNTALLTLAGLSTSVSLSAHAAAAPEEIRLDYAYYSPTSLVLKHFGWLEEQVK 60 Query: 61 AQGTEVKWVLSQGSNRALEYLNSDSIDFGSTAGLAALLARANGNPVKAVYIYSRPEWTAL 120 + G +VKW LSQGSNRALEYL+++SIDFGSTAGLAA+L+RANGNP+K+VY+YSRPEWTAL Sbjct: 61 SSGIKVKWTLSQGSNRALEYLSANSIDFGSTAGLAAVLSRANGNPIKSVYVYSRPEWTAL 120 Query: 121 AVGKDSPVRSISELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAALE 180 V KDSP++++++LKGKKIAATKGTDPYLFLLR L NGLKKSDVEIVHLQHADGRAALE Sbjct: 121 LVPKDSPIKTVADLKGKKIAATKGTDPYLFLLRTLKVNGLKKSDVEIVHLQHADGRAALE 180 Query: 181 QGRVAAWAGLDPHLAASELEAGSRLIYRNVNFNTYGFLNVSDSFAARYPDQVKRVLAAYE 240 GR+ AWAGLDPH+A+SEL+AGSRL+YRNV FNTYGFLNV++ FA +YP+QVK+VL AYE Sbjct: 181 SGRIDAWAGLDPHMASSELQAGSRLLYRNVAFNTYGFLNVTEDFAKKYPEQVKQVLQAYE 240 Query: 241 RARHWIIAHPDETVALLSEESKLSAPVARLQLKRNDFSHPQIGREHIEALRPAAPILLEE 300 RAR WI+A+P E + ++E+K+S VA++QL R DFS+P IGREH EAL+ AAPILL+E Sbjct: 241 RARLWILANPREASQIQADEAKISLAVAKVQLNRTDFSNPYIGREHREALQAAAPILLQE 300 Query: 301 DLVKSSTDLPRTINALIDPSYAQDV 325 DLVK TDL + IN LIDPS+ Q + Sbjct: 301 DLVKKGTDLNKVINDLIDPSFVQSL 325 >gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 326 Score = 130 bits (326), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 146/290 (50%), Gaps = 9/290 (3%) Query: 2 QRRHFLRLAPAALGATLLGSTPLIAGAAQPPKTLRLDYAYYSPPSLVLRKFGWLEEDLKA 61 +RR L+ AA+GA L P AGA Q LR+ Y Y ++L+ G LE+ L A Sbjct: 11 KRRTLGYLSAAAIGA-LSSGLPNFAGA-QSKSVLRIGYQKYGT-LVILKGRGTLEKRLAA 67 Query: 62 QGTEVKWVLSQGSNRALEYLNSDSIDFGSTAGLAALLARANGNPVKAVYIYSRP---EWT 118 + EVKW LE LN SIDFG+ + A+A G + VY+ + P Sbjct: 68 ENIEVKWTEFPAGPVLLEGLNVGSIDFGTVGEAPPIFAQAAGADL--VYVGNEPPSPTSE 125 Query: 119 ALAVGKDSPVRSISELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAA 178 A+ V K+S ++++++LKGKK+A KG++ + L++AL + L D+E + L AD RAA Sbjct: 126 AIIVPKNSTLKTVADLKGKKVALNKGSNVHYLLVKALEKASLDYKDIETIFLAPADARAA 185 Query: 179 LEQGRVAAWAGLDPHLAASELEAGSRLIYRNVNF-NTYGFLNVSDSFAARYPDQVKRVLA 237 E+G V AW DP LAA+E + G+R++ + F S S+A + P V +L Sbjct: 186 FERGSVDAWVIWDPFLAAAEKQIGARVLADGTGIVANHQFFLASRSYAEKNPKIVSILLD 245 Query: 238 AYERARHWIIAHPDETVALLSEESKLSAPVARLQLKRNDFSHPQIGREHI 287 ++ W + E +L ++ L P L KR + + E I Sbjct: 246 ELDQVDQWSSKNLAEVSKVLVAQTGLDLPSVELAAKRYSYGVKPVTAEVI 295 >gi|152981615|ref|YP_001355155.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 321 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 143/278 (51%), Gaps = 8/278 (2%) Query: 33 KTLRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSIDFGSTA 92 +TLR+ Y ++ + +L+ G LE+ L+ G +VKW + E LN D+IDFG A Sbjct: 33 RTLRIGYQKFNTLN-ILKGTGNLEKALQPLGWKVKWFEFAAGPQLTEALNLDAIDFGHAA 91 Query: 93 GLAALLARANGNPVKAVYIYSR---PEWTALAVGKDSPVRSISELKGKKIAATKGTDPYL 149 + A A G V AVY+ + P+ A+ V +DSP+RSI ELKGKKIA +G + Sbjct: 92 DTPSAFANAAG--VNAVYLAAEQPYPKGIAIFVAQDSPIRSIKELKGKKIALGRGWNVQY 149 Query: 150 FLLRALHENGLKKSDVEIVHLQH-ADGRAALEQGRVAAWAGLDPHLAASELEAGSRLIYR 208 L+RAL E GL +D+ ++ + AD RAA + G V A A DP LA ++ + R++ Sbjct: 150 LLVRALEEVGLTYNDIVPAYVTNAADVRAAFQSGNVDAAALWDPFLAGQQITSNPRILRD 209 Query: 209 NVNF-NTYGFLNVSDSFAARYPDQVKRVLAAYERARHWIIAHPDETVALLSEESKLSAPV 267 N F + F + + ++ + A ++ W AHP ET LL+ + + V Sbjct: 210 GSGLSNNRTFHLANPKFVDQNKNIIRILFAELKKTNTWTQAHPQETAELLAPQLGVDVKV 269 Query: 268 ARLQLKRNDFSHPQIGREHIEALRPAAPILLEEDLVKS 305 RL +R +++ I I+ + + +L+K+ Sbjct: 270 LRLATERRNYTTVPIDAGIIQEQQQIVEAFYKLNLIKN 307 >gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 320 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 137/289 (47%), Gaps = 3/289 (1%) Query: 17 TLLGSTPLIAGAAQPPKTLRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNR 76 T++ +A A P LR+ + Y +VL+ G LE L +V+W R Sbjct: 19 TVMSVKTALAADAYRPDVLRVGFQKYGT-LVVLKARGDLERKLANNNVKVEWFEFPTGPR 77 Query: 77 ALEYLNSDSIDFGSTAGLAALLARANGNPVKAV-YIYSRPEWTALAVGKDSPVRSISELK 135 LE LN +IDFG T + ++A G V Y P+ AL V ++S ++S+ +L Sbjct: 78 LLEALNIGAIDFGVTGDGPPIFSQAAGAKFFYVGYEPPSPKGIALVVKEESSIKSVKDLV 137 Query: 136 GKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLA 195 GKKIA +KG + ++ LLRAL NGLK +D+ ++L A+GRAA E G V W DP+LA Sbjct: 138 GKKIAVSKGGNVHVLLLRALQVNGLKPTDIVPIYLAPAEGRAAFESGAVDGWVAFDPYLA 197 Query: 196 ASELEAGSRLIYRNVNFN-TYGFLNVSDSFAARYPDQVKRVLAAYERARHWIIAHPDETV 254 + + +R+I + Y F S++ + PD V VL+ + + + Sbjct: 198 NVQHSSRTRVIQDGQGLSPNYQFYFASEALTTKRPDVVNLVLSEIKTVDEYASKNFSSVA 257 Query: 255 ALLSEESKLSAPVARLQLKRNDFSHPQIGREHIEALRPAAPILLEEDLV 303 L+ + V L+R + + E ++ + A + E L+ Sbjct: 258 KQLAPLIGMDESVVITALQRMGYGISPVTSEITQSQQKIADMFYEVGLI 306 >gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 317 Score = 105 bits (262), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/306 (28%), Positives = 138/306 (45%), Gaps = 12/306 (3%) Query: 22 TPLIAGAAQPPK---TLRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRAL 78 TPL A A K T+R+ Y S VL+ G LE+ L A G +V W L Sbjct: 18 TPLFALPAHAQKAGDTVRIGYQKSSTLITVLKTRGTLEQRLGALGVKVSWHEFASGLPLL 77 Query: 79 EYLNSDSIDFGS-TAGLAALLARANGNPVKAVYIYS-RPEWTALAVGKDSPVRSISELKG 136 E LN +ID + A + A+A G + + S P A+ V DS ++++++L+G Sbjct: 78 EALNVGAIDVSADVADTVPVFAQAAGAQLTYIAQESPSPSAQAIVVKADSNIKTLADLRG 137 Query: 137 KKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAA 196 K++ K + L+ AL + GL D+++ +L ADGRAA E+ + AW DP LAA Sbjct: 138 KRVGFAKAAGAHYLLIAALEKAGLSLKDIQLAYLAPADGRAAFEREAIDAWVIWDPFLAA 197 Query: 197 SELEAGSRLIYRNVNFNTYGFLNVSDS-FAARYPDQVKRVLAAYERARHWIIAHPDETVA 255 + ++ R++ Y +S + FA PD VK ++ A + W+ P + Sbjct: 198 VQRQSQVRVLTDGRGLADYQRYYLSSTPFAKARPDVVKVIVDALQETGKWVKQSPKDAAT 257 Query: 256 LLSEESKLSAPVARLQLKRNDFSHPQIGREHIEALRPAAPILLEEDLVKSSTDLPRTINA 315 LL+ L P R + + E + + A L E L LP+ +NA Sbjct: 258 LLAPVWGLDVPTVEQANARRSYEVRAVLPERLGEQQKIADAFLAEGL------LPKKVNA 311 Query: 316 LIDPSY 321 P + Sbjct: 312 TAVPVF 317 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 695,656 Number of extensions: 27095 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 6 Length of query: 328 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 244 Effective length of database: 910,473 Effective search space: 222155412 Effective search space used: 222155412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)