BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0614.p (291 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 309 1e-85 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 183 9e-48 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 151 4e-38 gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bica... 99 4e-22 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 84 1e-17 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 309 bits (792), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 159/242 (65%), Positives = 194/242 (80%), Gaps = 1/242 (0%) Query: 41 GWILPLAFLLLVEAGARLELIPSRLLPPPSELAHTLWSLAARGELLPHIVASVTRVAAGF 100 GWILPLA L VE A+L I +RLLPPPSE+ TL +L +G LL HI ASV RV +G+ Sbjct: 50 GWILPLAVLGFVEVAAQLGWIQARLLPPPSEIVQTLSALLEQG-LLVHISASVARVFSGY 108 Query: 101 AIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAI 160 AIG+VLA+ GL VG+S+ AEA EP+FQALRAIPSLAW+PLLLLW GIDETPK+ LIAI Sbjct: 109 AIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETPKITLIAI 168 Query: 161 GAFFPVYLNLVAGIRDIDHRLIEVGSSSGLDTTELIRHILLPASLPYLFAGLRGGLSLAW 220 GAFFP+YL LV+GIR++D +LIE+G GL L R I+LPA+LP LF GLR GLSLAW Sbjct: 169 GAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLRNGLSLAW 228 Query: 221 MFLVAAELIAATRGVGYLLSDGRESSRPDLVLAAILILAVLGKCSDSLLRAVEQKSLGWR 280 MFLVAAELIAAT+G+GYLL+DGRE+SRPD+VLAAI +LA+LGK +D LL+ +E + L W Sbjct: 229 MFLVAAELIAATKGIGYLLTDGRETSRPDVVLAAIFLLAILGKLTDGLLKWLETRKLAWS 288 Query: 281 EA 282 ++ Sbjct: 289 DS 290 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 183 bits (465), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 103/243 (42%), Positives = 149/243 (61%) Query: 38 RFTGWILPLAFLLLVEAGARLELIPSRLLPPPSELAHTLWSLAARGELLPHIVASVTRVA 97 + WI+P+ + + + ++L + SR+LP P +A W LA GEL H+ S+ R Sbjct: 29 KLVPWIVPVLLISVWQIASQLGWLSSRILPEPFAVAKAAWELALSGELWTHVKVSLWRAT 88 Query: 98 AGFAIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVL 157 FA+G L + LGLL G + AE LL+ + Q +R IP+LA IPL++LW GI+ET K+ L Sbjct: 89 TSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVILWFGIEETSKIFL 148 Query: 158 IAIGAFFPVYLNLVAGIRDIDHRLIEVGSSSGLDTTELIRHILLPASLPYLFAGLRGGLS 217 +A+G FFPVYLN GIR +D LIE+ S GL L R ++LP +LP + G+R L Sbjct: 149 VAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGALPSILVGVRFSLG 208 Query: 218 LAWMFLVAAELIAATRGVGYLLSDGRESSRPDLVLAAILILAVLGKCSDSLLRAVEQKSL 277 L W+ L+ AE I+A G+GY+ + RE + D+VL IL+ A+LGK +D + R +E L Sbjct: 209 LVWVLLIVAETISAQSGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVVSRTLEGYWL 268 Query: 278 GWR 280 W Sbjct: 269 RWH 271 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 151 bits (382), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 63 SRLLPPPSELAHTLWSLAARG-------ELLP-HIVASVTRVAAGFAIGSVLAVALGLLV 114 ++L+P P ++ L+ A G E LP H+ SVTRV GF +++ + LGLL+ Sbjct: 46 TQLIPLPKDVGLMLYDFAFGGIYDDAFSETLPLHLWKSVTRVYGGFFAAALVGIPLGLLI 105 Query: 115 GISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGI 174 G + LL+P+ Q LR +P AW+PL +++ GI + L+ +GAF+P+ N G+ Sbjct: 106 GRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIFLVFLGAFYPIVFNTTFGV 165 Query: 175 RDIDHRLIEVGSSSGLDTTELIRHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATRG 234 + +D+RL E G + + L R ++LPA++P + GLR G AW+ +V E+ G Sbjct: 166 KAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGHGFAWILIVVGEMTGVPEG 225 Query: 235 VGYLLSDGRESSRPDLVLAAILILAVLGKCSDSLLRAVEQKSLGW 279 +G ++ DGR SR DLV+A ++++ ++G +D +L A+ L W Sbjct: 226 LGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRILVAINNYLLKW 270 >gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 255 Score = 98.6 bits (244), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 2/234 (0%) Query: 48 FLLLVEAGARLELIPSRLLPPPSELAHTLWSLAARGELLPHIVASVTRVAAGFAIGSVLA 107 F+LL +A + LP P +L H G LLP I +S+ G +G++ Sbjct: 22 FVLLWKASGFFAWVNPGTLPDPFKLPHAFMQEWTAGRLLPAIGSSLVHYFWGLGLGTLFG 81 Query: 108 VALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVY 167 +A GL R E L + LR IP LAW+ + W + +I+IG F+ Y Sbjct: 82 IAFGLAAATIRPFELLQAYLIRILRPIPPLAWVVFAIAWFKVSHAGAAFVISIGVFWINY 141 Query: 168 LNLVAGIRDIDHRLIEVGSSSGLDTT-ELIRHILLPASLPYLFAGLRGGLSLAWMFLVAA 226 + +R+ID R E+ S G + I LPA P AG+R G+ AWM L+AA Sbjct: 142 YATASAVRNIDPRFYELARSFGQGSYWRRAVSITLPAIAPGTLAGIRTGIGQAWMTLIAA 201 Query: 227 ELIAATRGVGYLLSDGRESSRPDLVLAAILILAVLGKCSDSLLRAVEQKSLGWR 280 EL+ G+G ++ + V+ +L ++++ SD + +E++ L WR Sbjct: 202 ELLGVP-GMGQEMNAAAGVGAYEAVVIYMLAISLVYAISDLIYVLIEKRVLSWR 254 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 82/154 (53%) Query: 88 HIVASVTRVAAGFAIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWL 147 +I+AS+ RV GF + +++ + LG ++G + + P L+ + LAW+P+ LL Sbjct: 114 NILASLKRVGMGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVF 173 Query: 148 GIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHRLIEVGSSSGLDTTELIRHILLPASLPY 207 + + I I + +P+ +N G++ + + V L +++ IL P+ LPY Sbjct: 174 KAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPY 233 Query: 208 LFAGLRGGLSLAWMFLVAAELIAATRGVGYLLSD 241 + G+R + AW+ +VAAE++ G+G+ + D Sbjct: 234 MLTGVRLAIGTAWLVIVAAEMLTGGVGIGFWVWD 267 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 566,895 Number of extensions: 20612 Number of successful extensions: 84 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 6 Length of query: 291 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 209 Effective length of database: 917,867 Effective search space: 191834203 Effective search space used: 191834203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)