BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0613.p
         (320 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110 [...   263   1e-71

>gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110
           [Janthinobacterium sp. Marseille]
          Length = 307

 Score =  263 bits (672), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 181/325 (55%), Positives = 211/325 (64%), Gaps = 29/325 (8%)

Query: 1   MKKAFVALIVAVMTLSVGMSAVEAKRLGGGGSIGKQSSSASRQAQSPAPMQQNQAAAAKP 60
           MKK  +A+ V V +++      EAKR+GGGGS GKQS S  R    PAP Q + A A+KP
Sbjct: 1   MKKLLLAVAVMVSSMTFIAVEAEAKRMGGGGSFGKQSQSFQR----PAPAQSSSANASKP 56

Query: 61  AAPAAAPAAAAAKPS---MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIA 117
           AA  AA  A AA  +   M + +LGGALLGLGLGALLSH G+GGA ASMISTIL VAL+ 
Sbjct: 57  AAAPAAAGAGAAAAAKPSMMRNILGGALLGLGLGALLSHLGIGGAFASMISTILMVALLG 116

Query: 118 LAIMFVIRLVRRKSEGAQASQPAPAWASAAPQAADNASGTPQIGSLLKTD-------QSA 170
            A MF+ R+++ KS G  A QP+ A   +A  +      TP IGS L          QSA
Sbjct: 117 FAAMFIYRMIKNKSAGNNA-QPSFANGYSAKNS------TPDIGSGLNQQYQQPSALQSA 169

Query: 171 AATTQGGFGGGFGNAEVAPAYGIPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTT 230
           A    G        A       +PA FD   F+RNAKTYFIRLQAAWDKADINDIREFTT
Sbjct: 170 APMASG--------AAYEAVNELPADFDVESFIRNAKTYFIRLQAAWDKADINDIREFTT 221

Query: 231 PEMFAELRLQIQERGTASNQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPSASPAQ 290
           PEMFAEL+LQ+QERG   N TDVV+L+ E  GVETVGNDY+AS+KF G I+E   A    
Sbjct: 222 PEMFAELKLQLQERGATPNVTDVVTLNGEFYGVETVGNDYIASIKFTGMIREADHAPTEP 281

Query: 291 FAEIWNLSKPATGQGGWVLAGIQQL 315
           F+E WNLSKP  G GGWVLAGIQQL
Sbjct: 282 FSEAWNLSKPVNGNGGWVLAGIQQL 306


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 465,511
Number of extensions: 15345
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 237
Effective length of database: 914,170
Effective search space: 216658290
Effective search space used: 216658290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)