BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0611.p (236 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981350|ref|YP_001354553.1| two-components system response ... 415 e-117 gi|152981323|ref|YP_001354612.1| two components system response ... 249 1e-67 gi|152983128|ref|YP_001354753.1| two-component response regulato... 164 4e-42 gi|152981423|ref|YP_001354086.1| two-components system response ... 157 4e-40 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 147 4e-37 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 415 bits (1066), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/230 (89%), Positives = 216/230 (93%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRILLAEDDSVLADGLTRSLR SGYA DCVKNG EADS LSTQDFDLLILDLGLPKMSGL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 EVL+RLRARNSRLPVLILTA DS+EQRV+GLDLGADD+MAKPFALSELEARVRALTRRGA Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 GGGPTVIKHGPLS+DQVGRIAYI +QML+LSARELGLLEVLLQR+GRLVSKEQLVDHLCE Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEKLPEAGAAPLA 230 W EEVSNNAIEVYVHRLRKKIE+GG+RIATVRGLGYCLEK E +A Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEKFTETAPNTIA 230 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 249 bits (635), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/224 (57%), Positives = 159/224 (70%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRIL+ EDD+VLA LTR+L +GY+ D V NG +A AL+ + LL+LD+ LPKM GL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 VLRRLR R SRLPVLILTA D+++ RV GLDLGADDYM KPF L E EARVRAL RRG Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 GGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 ++ HG L FD + +Q +ELS REL + EVLL R G++V+KEQ++D L Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEKLPEA 224 WG++ +NAIEVYVHR RKK+E + I TVRG+GY LEK EA Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNINIRTVRGMGYLLEKSGEA 224 >gi|152983128|ref|YP_001354753.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 239 Score = 164 bits (415), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 M++L+ EDD ++A GL L+ G A CV V A+ A+ DFD+++LDLGLP GL Sbjct: 20 MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 +L+ R+R LPV++LTA D++E R+ GL GADDY+ KPF L EL AR+ A+ RR Sbjct: 80 TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139 Query: 121 GGGPTVIKHGPLSFD-QVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLC 179 G I GPL D Q G++ ++ E+++ LS RE +L L G ++ L D + Sbjct: 140 GRATQEITAGPLRLDPQYGQV-WLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVF 198 Query: 180 EWGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 ++S+NA+ V++H +R+K+ G I T RGLG+ L Sbjct: 199 GEDIQISSNALNVHIHNIRRKL--GAEAIETSRGLGFRL 235 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 157 bits (398), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 126/218 (57%), Gaps = 2/218 (0%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MR LL EDD + + ++L+ +G+ D ++G +A ++FD+ ILDLGLP++ GL Sbjct: 1 MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 VLRR RA PVLIL+A ++V+G++ GADDY+AKPF ++EL AR RAL RR A Sbjct: 61 SVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAA 120 Query: 121 GGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 G V+ G L+ D A + +Q + LS E L + GR VS +L +HL Sbjct: 121 GHADPVLICGALTLDTRRMTATVDKQPVRLSPLEFRFFSYLAHQAGRPVSAGELAEHLYG 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 E V NAIE V R+R+K G I T RG GY L Sbjct: 181 DSEGVDTNAIEALVLRMRRKF--GADLIETRRGFGYML 216 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 147 bits (372), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 M+ILL ED+ + L + LR +G+ D ++G E + ++L+ILD+ LP + G Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 EVLRRLR-ARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRG 119 ++LR LR R++ PVL LTA D VE RV+GL+LGADDY+ KPF+ EL ARVR L RRG Sbjct: 61 QLLRELRKVRDT--PVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRG 118 Query: 120 AGGGPTVIKHGPLSFDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLC 179 ++I+ + D + R + L+L+A+E LL +L QR G ++S+ + + Sbjct: 119 PVRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVW 178 Query: 180 EWGEEVSNNAIEVYVHRLRKKIEVGGVR--IATVRGLGYCLEK 220 + + N ++V + RLR K++ R I TVRG+GY LE+ Sbjct: 179 DMNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLEE 221 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 491,744 Number of extensions: 19418 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 36 Length of query: 236 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 156 Effective length of database: 925,261 Effective search space: 144340716 Effective search space used: 144340716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)